Briefings in Bioinformatics, Volume 6

Volume 6, Number 1, March 2005

• Russ B. Altman: Editorial: Annual progress in bioinformatics. 4-5
• Serafim Batzoglou: The many faces of sequence alignment. 6-22
• Christopher Lee, Qi Wang: Bioinformatics analysis of alternative splicing. 23-33
• Olga G. Troyanskaya: Putting microarrays in a context: Integrated analysis of diverse biological data. 34-43
• Sean D. Mooney: Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis. 44-56
• Aaron M. Cohen, William R. Hersh: A survey of current work in biomedical text mining. 57-71
• Peter Bengert, Thomas Dandekar: Current efforts in the analysis of RNAi and RNAi target genes. 72-85
• David P. Kreil, Roslin Russell: There is no silver bullet - a guide to low-level data transforms and normalisation methods for microarray data. 86-97

Volume 6, Number 2, June 2005

• Martin J. Bishop: Editorial. 117
• Igor B. Rogozin, Alexander V. Sverdlov, Vladimir N. Babenko, Eugene V. Koonin: Analysis of evolution of exon-intron structure of eukaryotic genes. 118-134
• Rudi Alberts, Jingyuan Fu, Morris A. Swertz, L. Alrik Lubbers, Casper J. Albers, Ritsert C. Jansen: Combining microarrays and genetic analysis. 135-145
• Ravi Sachidanandam: RNAi as a bioinformatics consumer. 146-162
• Hendrik Fuß, Werner Dubitzky, C. Stephen Downes, Mary Jo Kurth: Mathematical models of cell cycle regulation. 163-177
• Pieter B. T. Neerincx, Jack A. M. Leunissen: Evolution of web services in bioinformatics. 178-188
• Jane Loveland: VEGA, the genome browser with a difference. 189-193
• Don Gilbert: Biomolecular Interaction Network Database. 194-198

Volume 6, Number 3, September 2005

• Jacob Koehler: Editorial. 220-221
• Hagit Shatkay: Hairpins in bookstacks: Information retrieval from biomedical text. 222-238
• Irena Spasic, Sophia Ananiadou, John McNaught, Anand Kumar: Text mining and ontologies in biomedicine: Making sense of raw text. 239-251
• Sougata Mukherjea: Information retrieval and knowledge discovery utilising a biomedical Semantic Web. 252-262
• Andre Skusa, Alexander Rüegg, Jacob Köhler: Extraction of biological interaction networks from scientific literature. 263-276
• Marc Weeber, Jan A. Kors, Barend Mons: Online tools to support literature-based discovery in the life sciences. 277-286
• Matthias Scherf, Anton Epple, Thomas Werner: The next generation of literature analysis: Integration of genomic analysis into text mining. 287-297
• Get ready to GO! A biologist's guide to the Gene Ontology. 298-304

Volume 6, Number 4, 2005

• Martin J. Bishop:
  Editorial. 317
  

• Colin D. Meiklejohn, Jeffrey P. Townsend:
  A Bayesian method for analysing spotted microarray data. 318-330
  
• Paul C. Boutros, Allan B. Okey:
  Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data. 331-343
  
• William R. Hersh:
  Evaluation of biomedical text-mining systems: Lessons learned from information retrieval. 344-356
  
• Ulf Leser, Jörg Hakenberg:
  What makes a gene name? Named entity recognition in the biomedical literature. 357-369
  
• John W. Keele, James E. Wray:
  Software agents in molecular computational biology. 370-379
  
• Gregory W. Carter:
  Inferring network interactions within a cell. 380-389
  

• Paulo A. S. Nuin:
  WinPop 2.5: Software for representing population genetics phenomena. 390-393
  

• Zuofeng Li, Li Wang, Yang Zhong:
  Detecting horizontal gene transfer with T-REX and RHOM programs. 394-401
  

• I. King Jordan:
  Abstracts. 402-410