Briefings in Bioinformatics, Volume 6

Volume 6, Number 1, March 2005

• Russ B. Altman:
  Editorial: Annual progress in bioinformatics. 4-5
  
• Serafim Batzoglou:
  The many faces of sequence alignment. 6-22
  
• Christopher Lee, Qi Wang:
  Bioinformatics analysis of alternative splicing. 23-33
  
• Olga G. Troyanskaya:
  Putting microarrays in a context: Integrated analysis of diverse biological data. 34-43
  
• Sean D. Mooney:
  Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis. 44-56
  
• Aaron M. Cohen, William R. Hersh:
  A survey of current work in biomedical text mining. 57-71
  
• Peter Bengert, Thomas Dandekar:
  Current efforts in the analysis of RNAi and RNAi target genes. 72-85
  
• David P. Kreil, Roslin Russell:
  There is no silver bullet - a guide to low-level data transforms and normalisation methods for microarray data. 86-97
  

Volume 6, Number 2, June 2005

• Martin J. Bishop:
  Editorial. 117
  
• Igor B. Rogozin, Alexander V. Sverdlov, Vladimir N. Babenko, Eugene V. Koonin:
  Analysis of evolution of exon-intron structure of eukaryotic genes. 118-134
  
• Rudi Alberts, Jingyuan Fu, Morris A. Swertz, L. Alrik Lubbers, Casper J. Albers, Ritsert C. Jansen:
  Combining microarrays and genetic analysis. 135-145
  
• Ravi Sachidanandam:
  RNAi as a bioinformatics consumer. 146-162
  
• Hendrik Fuß, Werner Dubitzky, C. Stephen Downes, Mary Jo Kurth:
  Mathematical models of cell cycle regulation. 163-177
  
• Pieter B. T. Neerincx, Jack A. M. Leunissen:
  Evolution of web services in bioinformatics. 178-188
  
• Jane Loveland:
  VEGA, the genome browser with a difference. 189-193
  
• Don Gilbert:
  Biomolecular Interaction Network Database. 194-198
  

Volume 6, Number 3, September 2005

• Jacob Koehler:
  Editorial. 220-221
  
• Hagit Shatkay:
  Hairpins in bookstacks: Information retrieval from biomedical text. 222-238
  
• Irena Spasic, Sophia Ananiadou, John McNaught, Anand Kumar:
  Text mining and ontologies in biomedicine: Making sense of raw text. 239-251
  
• Sougata Mukherjea:
  Information retrieval and knowledge discovery utilising a biomedical Semantic Web. 252-262
  
• Andre Skusa, Alexander Rüegg, Jacob Köhler:
  Extraction of biological interaction networks from scientific literature. 263-276
  
• Marc Weeber, Jan A. Kors, Barend Mons:
  Online tools to support literature-based discovery in the life sciences. 277-286
  
• Matthias Scherf, Anton Epple, Thomas Werner:
  The next generation of literature analysis: Integration of genomic analysis into text mining. 287-297
  
• Get ready to GO! A biologist's guide to the Gene Ontology. 298-304
  

Volume 6, Number 4, 2005

• Martin J. Bishop:
  Editorial. 317
  

• Colin D. Meiklejohn, Jeffrey P. Townsend:
  A Bayesian method for analysing spotted microarray data. 318-330
  
• Paul C. Boutros, Allan B. Okey:
  Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data. 331-343
  
• William R. Hersh:
  Evaluation of biomedical text-mining systems: Lessons learned from information retrieval. 344-356
  
• Ulf Leser, Jörg Hakenberg:
  What makes a gene name? Named entity recognition in the biomedical literature. 357-369
  
• John W. Keele, James E. Wray:
  Software agents in molecular computational biology. 370-379
  
• Gregory W. Carter:
  Inferring network interactions within a cell. 380-389
  

• Paulo A. S. Nuin:
  WinPop 2.5: Software for representing population genetics phenomena. 390-393
  

• Zuofeng Li, Li Wang, Yang Zhong:
  Detecting horizontal gene transfer with T-REX and RHOM programs. 394-401
  

• I. King Jordan:
  Abstracts. 402-410
  

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