Briefings in Bioinformatics, Volume 7

Volume 7, Number 1, March 2006

• Claire Saxby:
  A new publisher for Briefings in Bioinformatics. 1
  

• Alexander Yu. Mitrophanov, Mark Borodovsky:
  Statistical significance in biological sequence analysis. 2-24
  
• Stan Pounds:
  Estimation and control of multiple testing error rates for microarray studies. 25-36
  
• Magnus Rattray, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil D. Lawrence:
  Propagating uncertainty in microarray data analysis. 37-47
  
• Irina I. Abnizova, Walter R. Gilks:
  Studying statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the eukaryotic genomes. 48-54
  
• Liliana Florea:
  Bioinformatics of alternative splicing and its regulation. 55-69
  
• Artem S. Novozhilov, Georgy P. Karev, Eugene V. Koonin:
  Biological applications of the theory of birth-and-death processes. 70-85
  
• Pedro Larrañaga, Borja Calvo, Roberto Santana, Concha Bielza, Josu Galdiano, Iñaki Inza, José Antonio Lozano, Rubén Armañanzas, Guzmán Santafé, Aritz Pérez Martínez, Victor Robles:
  Machine learning in bioinformatics. 86-112
  

• Lisa J. Mullan:
  Pairwise sequence alignment - it's all about us! 113-115
  

• I. King Jordan:
  Abstracts. 116-120
  

• Eitan Rubin:
  List mania: interpreting microarray results with the L2L server. 121-122
  

Volume 7, Number 2, June 2006

• Pedro Mendes:
  Metabolomics and the challenges ahead. 127
  

• Vladimir Shulaev:
  Metabolomics technology and bioinformatics. 128-139
  
• Jong Min Lee, Erwin P. Gianchandani, Jason A. Papin:
  Flux balance analysis in the era of metabolomics. 140-150
  
• Ralf Steuer:
  Review: On the analysis and interpretation of correlations in metabolomic data. 151-158
  
• Arthur L. Castle, Oliver Fiehn, Rima Kaddurah-Daouk, John C. Lindon:
  Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results. 159-165
  

• Christine Steinhoff, Martin Vingron:
  Normalization and quantification of differential expression in gene expression microarrays. 166-177
  
• Valery Shepelev, Alexei Fedorov:
  Advances in the Exon-Intron Database (EID). 178-185
  
• Timothy G. Lilburn, Scott H. Harrison, James R. Cole, George M. Garrity:
  Computational aspects of systematic biology. 186-195
  

• I. King Jordan:
  Abstracts. 196-201
  

• Eitan Rubin:
  Circumventing the cut-off for enrichment analysis. 202-203
  

Volume 7, Number 3, September 2006

• Russ B. Altman:
  Annual Progress in Bioinformatics 2006. 209-210
  

• Michael R. Barnes:
  Navigating the HapMap. 211-224
  
• Iddo Friedberg:
  Automated protein function prediction - the genomic challenge. 225-242
  
• Tero Aittokallio, Benno Schwikowski:
  Graph-based methods for analysing networks in cell biology. 243-255
  
• Olivier Bodenreider, Robert Stevens:
  Bio-ontologies: current trends and future directions. 256-274
  
• Benjamin M. Good, Mark D. Wilkinson:
  The Life Sciences Semantic Web is Full of Creeps! 275-286
  
• Jason E. Stajich, Hilmar Lapp:
  Open source tools and toolkits for bioinformatics: significance, and where are we? 287-296
  
• Giovanni Montana:
  Statistical methods in genetics. 297-308
  

• I. King Jordan:
  Abstracts. 309-312
  

Volume 7, Number 4, December 2006

• Werner Dubitzky:
  Understanding the computational methodologies of systems biology. 315-317
  

• Aylwin Ng, Borisas Bursteinas, Qiong Gao, Ewan Mollison, Marketa Zvelebil:
  Resources for integrative systems biology: from data through databases to networks and dynamic system models. 318-330
  
• Lena Strömbäck, Vaida Jakoniene, He Tan, Patrick Lambrix:
  Representing, storing and accessing molecular interaction data: a review of models and tools. 331-338
  
• David R. Gilbert, Hendrik Fuß, Xu Gu, Richard J. Orton, Steve Robinson, Vladislav Vyshemirsky, Mary Jo Kurth, C. Stephen Downes, Werner Dubitzky:
  Computational methodologies for modelling, analysis and simulation of signalling networks. 339-353
  
• Hidde de Jong, Delphine Ropers:
  Strategies for dealing with incomplete information in the modeling of molecular interaction networks. 354-363
  
• Natal A. W. van Riel:
  Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. 364-374
  
• Alexey N. Pavlov, Valeri A. Makarov, Erik Mosekilde, Olga V. Sosnovtseva:
  Application of wavelet-based tools to study the dynamics of biological processes. 375-389
  
• Kevin Burrage, Lindsay Hood, Mark A. Ragan:
  Advanced computing for systems biology. 390-398
  
• Phoebe M. Roberts:
  Mining literature for systems biology. 399-406
  

• I. King Jordan:
  Abstracts. 407-412