Volume 13,
Number 1,
February 1997
Articles
- Kathleen M. Currey, Bruce A. Shapiro:
Secondary structure computer prediction of the poliovirus 5' non-coding region is improved by a genetic algorithm.
1-12
- G. Chelvanayagam, Simon Easteal:
Correlating patterns in alignments of polymorphic sequences with experimental assays.
13-22
- Asaf A. Salamov, Victor V. Solovyev:
Recognition of 3'-processing sites of human mRNA precursors.
23-28
- Q. K. Chen, G. Z. Hertz, Gary D. Stormo:
PromFD 1.0: a computer program that predicts eukaryotic pol II promoters using strings and IMD matrices.
29-35
- E. V. Korotkov, M. A. Korotkova, J. S. Tulko:
Latent sequence periodicity of some oncogenes and DNA-binding protein genes.
37-44
- J. Alicia Grice, Richard Hughey, Don Speck:
Reduced space sequence alignment.
45-53
- Benny Shomer:
EMBL sequence submission system--an object-oriented approach to developing interactive data collection systems through the WWW.
55-60
- C. Hoogland, C. Biemont:
DROSOPOSON: a knowledge base on chromosomal localization of transposable element insertions in Drosophila.
61-68
- C. Chevalet, Jérôme Gouzy, M. SanCristobal-Gaudy:
Regional assignment of genetic markers using a somatic cell hybrid panel: a WWW interactive program available for the pig genome.
69-73
- Kun-Mao Chao, Jinghui Zhang, James Ostell, Webb Miller:
A tool for aligning very similar DNA sequences.
75-80
- G. S. Miller, Rainer Fuchs:
Post-processing of BLAST results using databases of clustered sequences.
81-87
- Kornelie Frech, Kerstin Quandt, Thomas Werner:
Software for the analysis of DNA sequence elements of transcription.
89-97
- Michael G. Roberts, D. A. Phoenix, A. R. Pewsey:
An algorithm for the detection of surface-active alpha helices with the potential to anchor proteins at the membrane interface.
99-106
- W. Bains:
Hexanucleotide frequency database.
107-108
- Kornelie Frech, P. Dietze, Thomas Werner:
ConsInspector 3.0: new library and enhanced functionality.
109-110
- Alexis S. Ivanov, Andrey B. Rumjantsev, Vladlen S. Skvortsov, Alexander I. Archakov:
ONIX: an interactive PC program for the examination of protein 3D structure from PDB.
111-113
Volume 13,
Number 2,
April 1997
Articles
- Alexander G. Bachinsky, Andrey A. Yarigin, E. H. Guseva, V. A. Kulichkov, Lily Ph. Nizolenko:
A bank of protein family patterns for rapid identification of possible functions of amino acid sequences.
115-122
- J. H. Woods, H. M. Sauro:
Elasticities in Metabolic Control Analysis: algebraic derivation of simplified expressions.
123-130
- Eric Rivals, Olivier Delgrange, Jean-Paul Delahaye, Max Dauchet, Marie-Odile Delorme, Alain Hénaut, Emmanuelle Ollivier:
Detection of significant patterns by compression algorithms: the case of approximate tandem repeats in DNA sequences.
131-136
- Eric Glémet, Jean-Jacques Codani:
LASSAP, a LArge Scale Sequence compArison Package.
137-143
- A. Wozniak:
Using video-oriented instructions to speed up sequence comparison.
145-150
- Jacek Blazewicz, Janusz Kaczmarek, Marta Kasprzak, Wojciech T. Markiewicz, Jan Weglarz:
Sequential and parallel algorithms for DNA sequencing.
151-158
- R. Varón, F. García Sevilla, M. García-Moreno, F. García-Cánovas, R. Peyro, R. G. Duggleby:
Computer program for the equations describing the steady state of enzyme reactions.
159-167
- L. Winder, M. Lefley, B. Smith:
A key for freshwater invertebrates using fuzzy logic.
169-174
- Todd Smith, Chris Abajian, Leroy E. Hood:
Hopper: software for automating data tracking and flow in DNA sequencing.
175-182
- Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara:
Application of a deductive database system to search for topological and similar three-dimensional structures in protein.
183-190
- Christian Barrett, Richard Hughey, Kevin Karplus:
Scoring hidden Markov models.
191-199
- L. Cocea:
Search the Human cDNA Database at TIGR.
201-204
- I. Belyi, Pavel A. Pevzner:
Software for DNA sequencing by hybridization.
205-210
Volume 13,
Number 3,
June 1997
Articles
- R. R. Mallios:
An iterative algorithm for converting a class II MHC binding motif into a quantitative predictive model.
211-215
- Prakash M. Nadkarni:
Mapdiff: determining differences between two genomic maps.
217-225
- Yves Van de Peer, Rupert De Wachter:
Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites.
227-230
- Patrick Aloy, Juan Cedano, Baldomero Oliva, Francesc X. Avilés, Enrique Querol:
'TransMem': a neural network implemented in Excel spreadsheets for predicting transmembrane domains of proteins.
231-234
- Andrew Rambaut, N. C. Grassly:
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees.
235-238
- Rainer Fuchs:
Grouper - creation of marker sets for multiplexed genotyping.
239-241
- Anatoly S. Frolov, I. S. Pika, A. M. Eroshkin:
ProMSED: protein multiple sequence editor for Windows 3.11/95.
243-248
- Eric Depiereux, G. Baudoux, P. Briffeuil, I. Reginster, Xavier De Bolle, C. Vinals, Ernest Feytmans:
Match-Box_server: a multiple sequence alignment tool placing emphasis on reliability.
249-256
- Josef Pánek, Jiri Vohradsky:
Object-oriented developmental environment for image-analysis applications: implementation for 2D gel electrophoretogram analysis.
257-262
- S. Tiwari, S. Ramachandran, A. Bhattacharya, S. Bhattacharya, R. Ramaswamy:
Prediction of probable genes by Fourier analysis of genomic sequences.
263-270
- L. Ehrlich, C. Munkel, G. Chirico, J. Langowski:
A Brownian dynamics model for the chromatin fiber.
271-279
- S. Panzer, L. Cooley, Perry L. Miller:
Using explicitly represented biological relationships for database navigation and searching via the World-Wide Web.
281-290
- Gilles Labesse, N. Colloc'h, Joël Pothier, J. P. Mornon:
P-SEA: a new efficient assignment of secondary structure from C alpha trace of proteins.
291-295
- András Fiser, Zsuzsanna Dosztányi, István Simon:
The role of long-range interactions in defining the secondary structure of proteins is overestimated.
297-301
- Andrew Rambaut, P. H. Harvey, S. Nee:
End-Epi: an application for inferring phylogenetic and population dynamical processes from molecular sequences.
303-306
- Julio Rozas, Ricardo Rozas:
DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis.
307-311
- Joaquín Dopazo:
A new index to find regions showing an unexpected variability or conservation in sequence alignments.
313-317
- Florencio Pazos, O. Olmea, Alfonso Valencia:
A graphical interface for correlated mutations and other protein structure prediction methods.
319-321
- Y. Wada, K. Inoue, K. Ohga, H. Yasue:
Software tool for gene mapping: gRanch.
323-324
Volume 13,
Number 4,
August 1997
Articles
- William R. Pearson:
Identifying distantly related protein sequences.
325-332
- David B. Searls:
Linguistic approaches to biological sequences.
333-344
- Burkhard Rost, Seán I. O'Donoghue:
Sisyphus and prediction of protein structure.
345-356
- Tatsuya Akutsu, Kentaro Onizuka, Masato Ishikawa:
Rapid protein fragment search using hash functions based on the Fourier transform.
357-364
- Steven Salzberg:
A method for identifying splice sites and translational start sites in eukaryotic mRNA.
365-376
- J. H. Hofmeyr, A. Cornish-Bowden:
The reversible Hill equation: how to incorporate cooperative enzymes into metabolic models.
377-385
- Hiroyuki Toh:
Introduction of a distance cut-off into structural alignment by the double dynamic programming algorithm.
387-396
- William Noble Grundy, Timothy L. Bailey, Charles Elkan, Michael E. Baker:
Meta-MEME: motif-based hidden Markov models of protein families.
397-406
- P. Durand, L. Canard, J. P. Mornon:
Visual BLAST and visual FASTA: graphic workbenches for interactive analysis of full BLAST and FASTA outputs under Microsoft Windows 95/NT.
407-413
- M. Ito, Y. Matsuo, Ken Nishikawa:
Prediction of protein secondary structure using the 3D-1D compatibility algorithm.
415-424
- R. W. Hooft, Chris Sander, Gert Vriend:
Objectively judging the quality of a protein structure from a Ramachandran plot.
425-430
- V. Biaudet, Franck Samson, Philippe Bessières:
Micado - a network-oriented database for microbial genomes.
431-438
- S. Lay, D. Bray:
A computer program for the analysis of protein complex formation.
439-444
- J. Schafer, M. Schoniger:
DISTREE: a tool for estimating genetic distances between aligned DNA sequences.
445-451
- R. W. Gill, T. Charles Hodgman, C. B. Littler, M. D. Oxer, D. S. Montgomery, S. Taylor, P. Sanseau:
A new dynamic tool to perform assembly of expressed sequence tags (ESTs).
453-457
- Bruce A. Shapiro, Jin Chu Wu:
Predicting RNA H-type pseudoknots with the massively parallel genetic algorithm.
459-471
- Ross D. King, Mansoor A. S. Saqi, Roger A. Sayle, Michael J. E. Sternberg:
DSC: public domain protein secondary structure predication.
473-474
- L. I. Toldo:
JaMBW 1.1: Java-based Molecular Biologists' Workbench.
475-476
- Richard Mott:
EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA.
477-478
- J. S. Amthor:
Calculation of daylength.
479-480
- Miguel A. Andrade, Georg Casari, Antoine de Daruvar, Chris Sander, Reinhard Schneider, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis:
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function.
481-483
- E. Lorenz, S. Leeton, R. J. Owen:
A simple method for sizing large fragments of bacterial DNA separated by PFGE.
485-486
Volume 13,
Number 5,
October 1997
Articles
- Ilya N. Shindyalov, Philip E. Bourne:
Protein data representation and query using optimized data decomposition.
487-496
- S. Goldberg, P. Ferrand, N. Q. Nguyen, Jean-François Boisvieux, Serge A. Hazout:
Bi-dimensional scaling map (BDS-Map): an approach for building large genetic maps.
497-508
- Inge Jonassen:
Efficient discovery of conserved patterns using a pattern graph.
509-522
- Carol Soderlund, I. Longden, Richard Mott:
FPC: a system for building contigs from restriction fingerprinted clones.
523-535
- Ronald G. Forsythe Jr., Peter D. Karp, Michael L. Mavrovouniotis:
Estimation of equilibrium constants using automated group contribution methods.
537-543
- Benny Shomer:
Seqalert - a daily sequence alertness server for the EMBL and SWISSPROT databases.
545-547
- Hugh E. Williams, Justin Zobel:
Compression of nucleotide databases for fast searching.
549-554
- Z. Yang:
PAML: a program package for phylogenetic analysis by maximum likelihood.
555-556
- W. Gronwald, Robert F. Boyko, Brian D. Sykes:
GSC: a graphical program for NMR chemical shift comparison.
557-558
- N. C. Grassly, J. Adachi, Andrew Rambaut:
PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees.
559-560
- David S. Wishart, S. Fortin, David R. Woloschuk, W. Wong, T. Rosborough, Gary H. Van Domselaar, Jonathan Schaeffer, Duane Szafron:
A platform-independent graphical user interface for SEQSEE and XALIGN.
561-562
- Jean-Paul Rolland, P. Bon, D. Thomas:
MACS: automatic counting of objects based on shape recognition.
563-564
Volume 13,
Number 6,
December 1997
Articles
- Ching Zhang, Andrew K. C. Wong:
A genetic algorithm for multiple molecular sequence alignment.
565-581
- Jan Gorodkin, Laurie J. Heyer, Søren Brunak, Gary D. Stormo:
Displaying the information contents of structural RNA alignments: the structure logos.
583-586
- P. A. Doris, A. Hayward-Lester, J. K. Hays Sr.:
Q-RT-PCR: data analysis software for measurement of gene expression by competitive RT-PCR.
587-591
- H. Kato, Y. Takahashi:
SS3D-P2: a three dimensional substructure search program for protein motifs based on secondary structure elements.
593-600
- Jérôme Gouzy, P. Eugene, Elizabeth A. Greene, Daniel Kahn, Florence Corpet:
XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences.
601-608
- Pascale Guerdoux-Jamet, Dominique Lavenier:
SAMBA: hardware accelerator for biological sequence comparison.
609-615
- D. Fenyo:
A software tool for the analysis of mass spectrometric disulfide mapping experiments.
617-618
- Hedvig Hegyi, J. M. Lai, Peer Bork:
The Sequence Alerting Server - a new WEB server.
619-620
- T. Sicheritz-Ponten:
BioWish: a molecular biology command extension to Tcl/Tk.
621-622
- A. S. Law, D. W. Burt:
Two applications to facilitate the viewing of database search result files on the Macintosh.
623-624
- Jens Stoye, Vincent Moulton, Andreas W. M. Dress:
DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment.
625-626
Copyright © Tue Nov 24 20:44:14 2009
by Michael Ley (ley@uni-trier.de)
