Computer Applications in the Biosciences, Volume 5

Volume 5, Number 1, February 1989

• T. Charles Hodgman:
  The elucidation of protein function by sequence motif analysis. 1-13
  
• R. Stulich, K. Rohde:
  EMBOPRO--an automatically generated protein sequence database. 15-18
  
• G. H. Dibdin:
  A simple add-on algorithm to extend one-dimensional finite difference diffusion calculations to include charge coupling. 19-26
  
• Panagiotis A. Tsonis, Anastasios A. Tsonis:
  Chaos: principles and implications in biology. 27-32
  
• Stefano Volinia, Roberto Gambari, F. Bernardi, Italo Barrai:
  The frequency of oligonucleotides in mammalian genic regions. 33-40
  
• S. Sjoberg, P. Carlsson, S. Enerback, G. Bjursell:
  A compact, flexible and cheap system for acquiring sequence data from autoradiograms with a digitizer and transferring it to an arbitrary host computer. 41-46
  
• José L. Oliver, A. Marin, J. R. Medina:
  SDSE: a software package to simulate the evolution of a pair of DNA sequences. 47-50
  
• W. Bains:
  MULTAN (2), a multiple string alignment program for nucleic acids and proteins. 51-52
  
• Stefano Pascarella, Francesco Bossa:
  CLEAVAGE: a microcomputer program for predicting signal sequence cleavage sites. 53-54
  
• J. L. Micol:
  A computer program for the generation of problems in genetics for teaching purposes. 55
  
• R. Gasperini:
  Using Lotus 1-2-3 to determine correlation of linearly related method comparison data. 56-57
  

Volume 5, Number 2, April 1989

• Rodger Staden:
  Methods for calculating the probabilities of finding patterns in sequences. 89-96
  
• G. Mengeritsky, Temple F. Smith:
  New analytical tool for analysis of splice site sequence determinants. 97-100
  
• J. Sulston, F. Mallett, R. Durbin, Terry Horsnell:
  Image analysis of restriction enzyme fingerprint autoradiograms. 101-106
  
• R. Rechid, Martin Vingron, P. Argos:
  A new interactive protein sequence alignment program and comparison of its results with widely used algorithms. 107-113
  
• Martin Vingron, P. Argos:
  A fast and sensitive multiple sequence alignment algorithm. 115-121
  
• R. F. Mott, T. B. Kirkwood, R. N. Curnow:
  A test for the statistical significance of DNA sequence similarities for application in databank searches. 123-131
  
• P. M. Reid, A. E. Wilkinson, K. C. Leung, M. N. Jones:
  SED88: a Pascal program for the analysis of sedimentation equilibrium data. 133-135
  
• T. Brittain:
  A BASIC program for the removal of noise from reaction traces using Fourier filtering. 137-140
  
• C. M. Henneke:
  A multiple sequence alignment algorithm for homologous proteins using secondary structure information and optionally keying alignments to functionally important sites. 141-150
  
• Desmond G. Higgins, P. M. Sharp:
  Fast and sensitive multiple sequence alignments on a microcomputer. 151-153
  
• Judith E. Broom, Peter A. Stockwell, Diana F. Hill:
  GELENT: a sequence gel entry program for keyboard and sonic digitizer input. 155-157
  
• Gilbert Deléage, F. F. Clerc, B. Roux:
  ANTHEPROT: IBM PC and Apple Macintosh versions. 159-160
  
• A. Sette, L. Adorini, C. Mancini, G. Doria:
  A BASIC microcomputer program for data analysis of limiting dilution assays. 161
  

Volume 5, Number 3, July 1989

• E. B. Moser:
  Exploring contingency tables with correspondence analysis. 183-189
  
• M. P. Weiner, Harold A. Scheraga:
  A set of Macintosh computer programs for the design and analysis of synthetic genes. 191-198
  
• J. Vu Tien Khang:
  A FORTRAN subroutine to compute inbreeding and kinship coefficients according to the number of ancestral generations. 199-204
  
• Shu-Yun Le, J. Owens, Ruth Nussinov, Jih-H. Chen, Bruce A. Shapiro, Jacob V. Maizel:
  RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. 205-210
  
• T. A. Thanaraj, Ashok S. Kolaskar, Madhusudhan W. Pandit:
  An extension of the graph theoretical approach to predict the secondary structure of large RNAs: the complex of 16S and 23S rRNAs from E. coli as a case study. 211-218
  
• Modesto Orozco, R. Franco:
  TEFOOL/2: a program for theoretical drug design on microcomputers. 219-226
  
• K. Y. Cockwell, I. G. Giles:
  Software tools for motif and pattern scanning: program descriptions including a universal sequence reading algorithm. 227-232
  
• E. L. Cabot, A. T. Beckenbach:
  Simultaneous editing of multiple nucleic acid and protein sequences with ESEE. 233-234
  
• R. Dannenfelser, Samuel H. Yalkowsky:
  Database for aqueous solubility of nonelectrolytes. 235-236
  
• J. D. Liu, J. S. Parkinson:
  A Macintosh program for drawing circular plasmid maps. 237-238
  
• J. Marszalek, J. Kostrowicki, J. Spychala:
  LEHM: a convenient non-linear regression microcomputer program for fitting Michaelis-Menten and Hill models to enzyme kinetic data. 239-240
  
• Modesto Orozco, F. Javier Luque:
  POEAMS: program for outliers elimination in 'anomalous' multidimensional space. 241-242
  
• A. Zullini, G. Manganelli:
  A new computer program for nematode identification. 243-244
  
• A. Suitsu, R. Vilu, U. Jarv:
  Programs for reference library managing. 245
  

Volume 5, Number 4, October 1989

• E. Hamori, G. Varga, J. J. LaGuardia:
  HYLAS: program for generating H curves (abstract three-dimensional representations of long DNA sequences). 263-269
  
• A. Galat:
  Analysis of dynamics trajectories of DNA and DNA-drug complexes. 271-278
  
• A. Galat:
  CORGEN: a FORTRAN-77 generator of standard and non-standard DNA helices from the sequence. 279-286
  
• Jean Thioulouse:
  Statistical analysis and graphical display of multivariate data on the Macintosh. 287-292
  
• Rodger Staden:
  Methods for discovering novel motifs in nucleic acid sequences. 293-298
  
• Antonio Facchiano, Francesco Facchiano, R. Ragone, Giovanni Colonna:
  FAST (Flexible Analysis by Software Tool) and CHAMP (CHemico-physical AMinoacidic Parameter data bank): a new tool to investigate protein structure. 299-303
  
• J. Bermudez, D. Lopez, J. Valls, J. Wagensberg:
  On the analysis of microbiological processes by Monte Carlo simulation techniques. 305-312
  
• G. J. King:
  ELBAMAP: software for management of electrophoresis banding patterns. 313-317
  
• Stefano Pascarella, Francesco Bossa:
  PRONET: a microcomputer program for predicting the secondary structure of proteins with a neural network. 319-320
  
• A. Roy, T. K. Roy:
  A database management system for recombinant DNA clones and hosts for use in IBM personal computers. 321-322
  
• Kenneth Andrew Sikaris, E. Minasian, Simon Joshua Leach, R. Flegg:
  Computer program designed to predict and plot the secondary structure of proteins. 323
  

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