Computer Applications in the Biosciences, Volume 6

Volume 6, Number 1, January 1990

• A. Gabrielian, V. S. Ivanov, A. T. Kozhich:
  On searching for the active sites in proteins and peptide hormones. 1-2
  
• B. Henrissat, E. Raimbaud, V. Tran, J. P. Mornon:
  HCABAND: a computer program for the 2D-helical representation of protein sequences. 3-5
  
• Jih-H. Chen, Shu-Yun Le, Bruce A. Shapiro, Kathleen M. Currey, Jacob V. Maizel:
  A computational procedure for assessing the significance of RNA secondary structure. 7-18
  
• J. Gomel:
  A fast algorithm for evaluating an approximation to the information enclosed within coronas and their sectors in square matrices. 19-21
  
• Hermann-Georg Holzhütter, Alfredo Colosimo:
  SIMFIT: a microcomputer software-toolkit for modelistic studies in biochemistry. 23-28
  
• M. L. Sparling:
  Analysis of mixed lipid extracts using 1H NMR spectra. 29-42
  
• G. M. Suboch, Yu. A. Sprizhitsky:
  Statistical significance of some complex nucleotide combinations: a comparison of DNA models. 43-48
  
• P. Wozniak, Wojciech Makalowski:
  Searching for tRNA genes in DNA sequences--an IBM microcomputer program. 49-50
  
• R. Myers, S. Olson, S. Maloy:
  Computer programs for the rapid determination of enzyme kinetics on MS- DOS compatible microcomputers. 51-53
  
• K. P. Fung, J. Lee:
  Basic program to assess the extent and pattern of agreement between two procedures. 54
  
• M. D. Atkinson, J. S. Heslop-Harrison:
  A simple method of hidden-line removal in three-dimensional modelling: hiding the problem behind filled polygons. 55-56
  

Volume 6, Number 2, April 1990

• R. Myers, S. Olsen, S. Maloy:
  Computer programs for the rapid determination of enzyme kinetics on MS- DOS compatible microcomputers. 63-65
  
• P. R. Hunter:
  A character separation index suitable for binary data containing equivocal responses. 67-69
  
• Alain Viari, Henry Soldano, E. Ollivier:
  A scale-independent signal processing method for sequence analysis. 71-80
  
• G. Z. Hertz, G. W. Hartzell III, Gary D. Stormo:
  Identification of consensus patterns in unaligned DNA sequences known to be functionally related. 81-92
  
• J. M. Smith, D. J. Thomas:
  Quantitative analysis of one-dimensional gel electrophoresis profiles. 93-99
  
• L. Menendez-Arias, R. Rodriguez:
  A BASIC microcomputer program for prediction of B and T cell epitopes in proteins. 101-105
  
• A. V. Grigorjev, Andrey A. Mironov:
  Mapping DNA by stochastic relaxation: a new approach to fragment sizes. 107-111
  
• D. G. Gilbert:
  Two Hypercard calculators for molecular biology. 113-116
  
• D. G. Gilbert:
  Dot plot sequence comparisons on Macintosh computers. 117
  
• Neil D. Rawlings, Alan J. Barrett:
  FLUSYS: a software package for the collection and analysis of kinetic and scanning data from Perkin-Elmer fluorimeters. 118-119
  
• Rainer Fuchs:
  Free molecular biological software available from the EMBL file server. 120-121
  
• G. W. Williams, G. P. Gibbs:
  Automatic updating of the EMBL database via EMBNet. 122-123
  
• C. G. Bridges:
  Olga--oligonucleotide primer design program for the Atari ST. 124-125
  
• J. H. Correia:
  Management of personal bibliographic reference using a simple database program. 126-127
  
• Pasquale Petrilli, Carlo Caporale, Ciro Sepe:
  PROLANG: an expandable software in protein chemistry. 128-130
  

Volume 6, Number 3, July 1990

• M. F. Petrini, T. M. Dwyer, M. A. Wall, J. K. Mansel, J. R. Norman:
  Communication between the PC and laboratory instruments. 161-164
  
• I. E. Auger, C. E. Lawrence:
  Identification of the most significant amphipathic helix with application to HIV and MHV envelope proteins. 165-171
  
• T. H. Fischer, G. C. White II:
  The development of a high-order Taylor expansion solution to the chemical rate equation for the simulation of complex biochemical systems. 173-177
  
• R. O. Stephen, P. M. Shelton, M. S. Bradshaw:
  Generating precise mechanical stimuli and recording chordotonal organ discharge patterns using a microcomputer. 179-188
  
• J. I. Mechanick, C. S. Peskin:
  A C version of Fourier-derived affinity spectrum analysis (FASA) to resolve binding heterogeneity. 189-194
  
• S. T. Ho, Lloyd Allison, Chut N. Yee:
  Restriction site mapping for three or more enzymes. 195-204
  
• K. Y. Jiang, J. Zheng, S. B. Higgins, D. M. Watterson, T. A. Craig, T. J. Lukas, L. J. Van Eldik:
  A knowledge-based experimental design system for nucleic acid engineering. 205-212
  
• Marc Eberhard:
  A set of programs for analysis of kinetic and equilibrium data. 213-221
  
• F. Blanca, C. Ferraz, J. Sri Widada, J. P. Liautard:
  Quantitative analysis of the selective pressure exerted on homologous proteins. 223-228
  
• A. Diaspro, P. Scelza, C. Nicolini:
  MUCIDS: an operative C environment for acquisition and processing of polarized-light scattered from biological specimens. 229-236
  
• Douglas L. Brutlag, Jean-Pierre Dautricourt, S. Maulik, J. Relph:
  Improved sensitivity of biological sequence database searches. 237-245
  
• Webb Miller, James Ostell, Kenneth E. Rudd:
  An algorithm for searching restriction maps. 247-252
  
• A. H. Reisner, C. A. Bucholtz, G. A. Bell, K. Tsui, D. Rosenfeld, Gabor T. Herman:
  Two- and three-dimensional image reconstructions from stained and autoradiographed histological sections. 253-261
  
• Chris A. Fields, C. A. Soderlund:
  gm: a practical tool for automating DNA sequence analysis. 263-270
  
• Pier Luigi Bellon, Salvatore Lanzavecchia:
  POLCA, a library running in a modern environment, implements a protocol for averaging randomly oriented images. 271-277
  
• Peter R. Sibbald, P. Argos:
  Scrutineer: a computer program that flexibly seeks and describes motifs and profiles in protein sequence databases [published erratum appears in Comput Appl Biosci 1990 Oct;6(4): 431]. 279-288
  
• B. Rossaro:
  Some programs useful for managing data in ecology, taxonomy and zoogeography. 289-290
  
• J. Mandler, S. Ludwig:
  SUBSIS: DNASIS/PROSIS subdirectory management. 291-292
  
• R. F. Mott, T. B. Kirkwood:
  STATSEARCH: a GCG-compatible program for assessing statistical significance during DNA and protein databank searches. 293-295
  

Volume 6, Number 4, October 1990

• Bruce A. Shapiro, Kaizhong Zhang:
  Comparing multiple RNA secondary structures using tree comparisons. 309-318
  
• Yoshua Bengio, Yannick Pouliot:
  Efficient recognition of immunoglobulin domains from amino acid sequences using a neural network. 319-324
  
• Daniel Gautheret, François Major, Robert Cedergren:
  Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA. 325-331
  
• Krzysztof J. Cios, R. E. Freasier, Lucy S. Goodenday, L. T. Andrews:
  An expert system for diagnosis of coronary artery stenosis based on 201Tl scintigrams using the Dempster-Shafer theory of evidence. 333-342
  
• Mark Dubnick, David W. Mount:
  SPLICE, a computer program for automated extraction of information from GenBank sequence entries. 343-346
  
• Jürgen Kleffe, Uwe Langbecker:
  Exact computation of pattern probabilities in random sequences generated by Markov chains. 347-35
  
• Philippe Dessen, C. Fondrat, C. Valencien, C. Mugnier:
  BISANCE: a French service for access to biomolecular sequence databases. 355-356
  
• Graham J. L. Kemp, Peter M. D. Gray:
  Finding hydrophobic microdomains using an object-oriented database. 357-363
  
• S. Winker, Ross A. Overbeek, Carl R. Woese, Gary J. Olsen, N. Pfluger:
  Structure detection through automated covariance search. 365-371
  
• Xiaoqiu Huang, Ross C. Hardison, Webb Miller:
  A space-efficient algorithm for local similarities. 373-381
  
• N. Gautier, A. Pave:
  Object-centered representation for species systematics and identification in living systems in nature. 383-386
  
• Rodger Staden:
  An improved sequence handling package that runs on the Apple Macintosh. 387-393
  
• P. L. Mauri, M. Bitonti, M. Pace, P. G. Pietta, D. Agnellini:
  Automatic computation of enzyme kinetics by HPLC. 395-398
  
• W. Bains:
  A program to optimize DNA sequences for protein expression. 399-400
  

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