Volume 8,
Number 1,
February 1992
Articles
- R. A. Sutherland, M. D. Partis:
Using fragment lengths from incomplete digestion by multiply cleaving enzymes to map antibody binding sites on a protein.
1-4
- Didier Arquès, Christian J. Michel, K. Orieux:
Analysis of gene evolution: the software AGE.
5-14
- Desmond G. Higgins:
Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets.
15-22
- J. Lee, C. Yoshizawa, L. Wilkens, H. P. Lee:
Covariance adjustment of survival curves based on Cox's proportional hazards regression model.
23-27
- J. Mrazek, J. Kypr:
GLOBIC: a very fast microcomputer program for fingerprinting, characterization and comparison of long nucleotide sequences.
29-34
- Mauno Vihinen, A. Euranto, P. Luostarinen, Olli Nevalainen:
MULTICOMP: a program package for multiple sequence comparison.
35-38
- Edgardo A. Ferrán, Pascual Ferrara:
Clustering proteins into families using artificial neural networks [published erratum appears in Comput Appl Biosci 1992 Jun;8(3): 305].
39-44
- Peter R. Sibbald, H. Sommerfeldt, P. Argos:
Overseer: a nucleotide sequence searching tool.
45-48
- G. Vogt, P. Argos:
Searching for distantly related protein sequences in large databases by parallel processing on a transputer machine.
49-55
- Mikhail A. Roytberg:
A search for common patterns in many sequences.
57-64
- J. Nedelman, P. Heagerty, C. Lawrence:
Quantitative PCR with internal controls.
65-70
- V. B. Cockcroft, J. T. Pedersen, G. G. Lunt, David J. Osguthorpe:
BIOSITE: a program for the interactive comparison of aligned homologous protein sequences.
71-73
- Christiaan Karreman:
A dotplot program for the Atari ST, for the analysis of DNA and protein sequences.
75-77
- V. E. Babenko, V. R. Sagitov:
VECTOR-PC: a flexible tool for the design, display and retrieval of information regarding to cloning vectors.
79-80
- Marc Eberhard, Bernd Leister, Cornelia Stoppkotte:
MULTI: a program for multicomponent analysis of spectra.
81
- B. I. Osborne:
HyperPCR: a Macintosh Hypercard program for the determination of optimal PCR annealing temperature.
83
Volume 8,
Number 2,
April 1992
Articles
- G. T. Innocent:
An investigation of the epidemiology of neuroblastoma in children under the age of 15 years in England, Scotland and Wales.
97-106
- K. Usdin:
Hypercard-based data management tools for molecular biologists.
107-111
- G. N. Rapoport, A. G. Hertz:
On a common structure of intelligence in biological and technical systems.
113-119
- Pavel A. Pevzner:
Statistical distance between texts and filtration methods in sequence comparison.
121-127
- Mikhail S. Gelfand, C. G. Kozhukhin, Pavel A. Pevzner:
Extendable words in nucleotide sequences.
129-135
- Desmond G. Higgins, Peter Stoehr:
EMBLSCAN: fast approximate DNA database searches on compact disc.
137-139
- Perry L. Miller, Prakash M. Nadkarni, P. A. Bercovitz:
Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis.
141-147
- F. R. Rysavy, M. J. Bishop, G. P. Gibbs, G. W. Williams:
The UK Human Genome Mapping Project online computing service.
149-154
- Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison:
Parallelization of a local similarity algorithm.
155-165
- Perry L. Miller, Prakash M. Nadkarni, William R. Pearson:
Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison.
167-175
- D. J. Eernisse:
DNA Translator and Aligner: HyperCard utilities to aid phylogenetic analysis of molecules.
177-184
- M. D. Partis:
MOMENT: software for analysis and display of amphiphilic regions in proteins.
185-188
- Desmond G. Higgins, Alan J. Bleasby, Rainer Fuchs:
CLUSTAL V: improved software for multiple sequence alignment.
189-191
- L. S. Davidow:
Selecting PCR designed mismatch primers to create diagnostic restriction sites.
193-194
- G. De Bellis, I. R. Consani, M. Manoni, R. Pergolizzi, M. Luzzana:
Fluorescent automated DNA sequencers: a file exchange program .
195
- J. A. Byers:
REF-LIST: program to list references found in DOS text files of scientific manuscripts.
196-198
- R. Jones:
Alerting users to relevant new entries in the GenBank DNA sequence database.
199
Volume 8,
Number 3,
June 1992
Articles
- P. J. Reddy, D. Krishna, U. S. Murty, K. Jamil:
A microcomputer FORTRAN program for rapid determination of lethal concentrations of biocides in mosquito control.
209-213
- C. Chevalet, B. Michot:
An algorithm for comparing RNA secondary structures and searching for similar substructures.
215-225
- Dong-Guk Shin, Changhwan Lee, Jinghui Zhang, Kenneth E. Rudd, Claire M. Berg:
Redesigning, implementing and integrating Escherichia coli genome software tools with an object-oriented database system.
227-238
- H. Pasternak, B. A. Shalev:
An algorithm to fit the Gompertz function to growth curves.
239-241
- Jih-H. Chen, Shu-Yun Le, Jacob V. Maizel:
A procedure for RNA pseudoknot prediction.
243-248
- J. C. Wallace, Steven Henikoff:
PATMAT: a searching and extraction program for sequence, pattern and block queries and databases.
249-254
- Colombe Chappey, Serge A. Hazout:
A method for delineating structurally homogeneous regions in protein sequences.
255-260
- A. Friemann, S. Schmitz:
A new approach for displaying identities and differences among aligned amino acid sequences.
261-265
- D. T. Kincaid, R. Pilette:
Construction of simple pathways and simple cycles in ecosystems.
267-273
- David T. Jones, William R. Taylor, Janet M. Thornton:
The rapid generation of mutation data matrices from protein sequences.
275-282
- B. Robson, P. J. Greaney:
Natural sequence code representations for compression and rapid searching of human-genome style databases.
283-289
- M. Dubnick:
STATUS, SEQSTAT, CSTATUS and LOAD: computer programs that facilitate large DNA-sequencing projects.
291-292
- O. Gefeller:
A simple method of avoiding the computational problems of the delta method for the end-user of statistical packages.
293-294
- D. Akrigg, Terri K. Attwood, Alan J. Bleasby, John B. C. Findlay, A. C. North, N. A. Maughan, D. J. Parry-Smith, D. N. Perkins, J. C. Wootton:
SERPENT - an information storage and analysis resource for protein sequences.
295-296
Volume 8,
Number 4,
August 1992
Articles
- P. Paz, J. Renau Piqueras, E. J. Tizado:
A program for the application of the radial distribution function to cluster analysis in cell biology.
307-309
- Nabil Kamel:
A profile for molecular biology databases and information resources.
311-321
- I. G. Badcoe:
A fast algorithm for counting the arrangements for packing identical items on a one-dimensional grid with application in DNA-protein and similar interactions.
323-330
- K. Hofmann, W. Stoffel:
PROFILEGRAPH: an interactive graphical tool for protein sequence analysis.
331-337
- N. N. Alexandrov:
Local multiple alignment by consensus matrix.
339-345
- Peter D. Karp:
A knowledge base of the chemical compounds of intermediary metabolism.
347-357
- A. Fielding:
Applications of fractal geometry to biology.
359-366
- Mineichi Kudo, S. Kitamura-Abe, Masaru Shimbo, Y. Lida:
Analysis of context of 5'-splice site sequences in mammalian mRNA precursors by subclass method.
367-376
- R. Jones:
Sequence pattern matching on a massively parallel computer.
377-383
- J. A. Lopez-Bueno, A. Moya:
GEOSEQ: a Pascal program to calculate statistical geometry parameters of aligned nucleic acid sequences.
385-388
- M. Schmitz, G. Steger:
Base-pair probability profiles of RNA secondary structures.
389-399
- J. Mrazek, J. Kypr:
DNABIND: an interactive microcomputer program searching for nucleotide sequences that may code for conserved DNA-binding protein motifs.
401-404
- J. Lee:
Comparison of variance between correlated samples.
405-406
- R. L. Read, D. Davison, J. E. Chappelear, John S. Garavelli:
GBPARSE: a parser for the GenBank flat-file format with the new feature table format.
407-408
- F. Dessaint:
Chull.sas: an SAS macro to construct the convex hull of one (or more) finite sets of points in a plane.
409
Volume 8,
Number 5,
October 1992
Articles
- Kira S. Makarova, A. V. Mazin, Yuri I. Wolf, V. V. Soloviev:
DIROM: an experimental design interactive system for directed mutagenesis and nucleic acids engineering.
425-431
- Jürgen Kleffe, Mark Borodovsky:
First and second moment of counts of words in random texts generated by Markov chains.
433-441
- H. J. Stoffers, Erik L. L. Sonnhammer, G. J. Blommestijn, N. J. Raat, H. V. Westerhoff:
METASIM: object-oriented modelling of cell regulation.
443-449
- D. J. Parry-Smith, Terri K. Attwood:
ADSP - a new package for computational sequence analysis.
451-459
- J. D. Parsons, S. Brenner, M. J. Bishop:
Clustering cDNA sequences.
461-466
- A. Jamie Cuticchia, Jonathan Arnold, H. Brody, William E. Timberlake:
CMAP: contig mapping and analysis package, a relational database for chromosome reconstruction.
467-474
- G. W. Dombi:
Limitations of Augustinsson plots.
475-479
- Kun-Mao Chao, William R. Pearson, Webb Miller:
Aligning two sequences within a specified diagonal band.
481-487
- G. H. Dibdin:
A finite-difference computer model of solute diffusion in bacterial films with simultaneous metabolism and chemical reaction.
489-500
- Eric Depiereux, Ernest Feytmans:
MATCH-BOX: a fundamentally new algorithm for the simultaneous alignment of several protein sequences.
501-509
- X. Huang, Michael S. Waterman:
Dynamic programming algorithms for restriction map comparison.
511-520
- Denis C. Shields, Desmond G. Higgins, P. M. Sharp:
GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content.
521-523
- J. Mrazek, A. Spanova:
ANAGEL: a personal computer program for evaluating DNA fragment lengths from distances migrated in an agarose gel.
524
Volume 8,
Number 6,
December 1992
Articles
- Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi:
Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices.
529-534
- S. P. Clark:
MALIGNED: a multiple sequence alignment editor.
535-538
- D. Waddington, D. W. Burt:
Estimation of restriction maps with known site order using a generalized linear model [published erratum appears in Comput Appl Biosci 1993 Apr;9(2): 242].
539-548
- A. Alvarruiz, A. Gutierrez, M. Rodrigo:
APL program for evaluation of heat processes for spherical foods.
549-554
- J. Lee:
Cumulative logit modelling for ordinal response variables: applications to biomedical research.
555-562
- G. Bouffard, James Ostell, Kenneth E. Rudd:
GeneScape: a relational database of Escherichia coli genomic map data for Macintosh computers.
563-567
- A. Guénoche:
Can we recover a sequence, just knowing all its subsequences of given length?
569-574
- F. Rodriguez, M. Prats:
Time correction for computing Michaelis-Menten kinetics.
575-577
- C. M. Comiskey, H. J. Ruskin:
AIDS in Ireland: the reporting delay distribution and the implementation of integral equation models.
579-581
- M. J. Flifla, Mireille Garreau, Jean-Paul Rolland, Jean-Louis Coatrieux, D. Thomas:
IBIS integrated biological imaging system: electron micrograph image-processing software running on Unix workstations.
583-586
- D. Piepenburg, U. Piatkowski:
A program for computer-aided analyses of ecological field data.
587-590
- A. Luttke, Rainer Fuchs:
MacT: Apple Macintosh programs for constructing phylogenetic trees.
591-594
- R. Schipper, M. Kenter, T. Rinke de Wit, J. D'Amaro:
A personal computer program for large-scale comparisons of related nucleotide sequences.
595-597
- J. Heringa, H. Sommerfeldt, Desmond G. Higgins, P. Argos:
OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity.
599-600
- M. Dubnick:
Btab - a Blast output parser.
601-602
- M. R. Ponce, J. L. Micol:
Two computer programs for the generation of problems in transmission genetics for teaching purposes.
603-604
- A. Howard:
MIGS - a simple graphics utility program.
605
Copyright © Fri Nov 13 04:29:38 2009
by Michael Ley (ley@uni-trier.de)
