Volume 9,
Number 1,
February 1993
Articles
- Chut N. Yee, Lloyd Allison:
Reconstruction of strings past.
1-7
- M. Suyama, A. Ogiwara, Takaaki Nishioka, J. Oda:
Searching for amino acid sequence motifs among enzymes: the Enzyme- Reaction Database.
9-15
- Victor V. Solovyev, Kira S. Makarova:
A novel method of protein sequence classification based on oligopeptide frequency analysis and its application to search for functional sites and to domain localization.
17-24
- G. Vogt, P. Argos:
Profile sequence analysis and database searches on a transputer machine connected to a Macintosh computer.
25-28
- D. Krishna, P. J. Reddy:
Microcomputer BASIC programs for rapid determination of lethal dosages of biocides using logit transformations.
29-35
- L. Lemesle-Varloot, C. Gaboriaud, A. Morgat, G. Pantel, J. P. Mornon, S. Lavaitte, F. Lestang, B. Henrissat:
MANSEK and SUNHCA. Two interactive programs for the hydrophobic cluster analysis of protein sequences.
37-44
- M. Hauer-Jensen:
Sample size calculation, power analysis and randomization: research project design in Windows.
45-47
- Thure Etzold, P. Argos:
SRS - an indexing and retrieval tool for flat file data libraries.
49-57
- Thure Etzold, P. Argos:
Transforming a set of biological flat file libraries to a fast access network.
59-64
- D. Venezia, P. J. O'Hara:
Rapid motif compliance scoring with match weight sets.
65-69
- Rainer Fuchs, Peter Stoehr:
EMBL-search: a CD-ROM based database query system.
71-77
- R. Schuster, Stefan Schuster:
Refined algorithm and computer program for calculating all non-negative fluxes admissible in steady states of biochemical reaction systems with or without some flux rates fixed.
79-85
- Christophe Geourjon, Gilbert Deléage:
Interactive and graphic coupling between multiple alignments, secondary structure predictions and motif/pattern scanning into proteins.
87-91
- Valerio Balzarotti, V. Colizzi, S. Morante, Valerio Parisi:
An algorithm for the identification of similar oligopeptides between amino acid sequences.
93-100
- Joaquín Dopazo, A. Taberner, A. Moya:
Quantitative characterization of antigens using monoclonal antibody reactivities.
101-107
- G. H. Dibdin:
Short algorithm to compensate for sampling-volume errors in diffusion- cell studies.
109-111
- D. S. Prestridge, Gary D. Stormo:
SIGNAL SCAN 3.0: new database and program features.
113-115
- E. Wallin, C. Wettergren, F. Hedman, Gunnar von Heijne:
Fast Needleman-Wunsch scanning of sequence databanks on a massively parallel computer.
117-118
Volume 9,
Number 2,
April 1993
Articles
- Joaquín Dopazo, A. Rodriguez, J. C. Saiz, F. Sobrino:
Design of primers for PCR amplification of highly variable genomes.
123-125
- M. D. Delahunty, J. P. Mack:
A general method of curve fitting and error analysis using a spreadsheet: determination of the binding constants of tight binding ligands in variable volume assays.
127-131
- J. E. Solomon, M. G. Harrington:
A robust, high-sensitivity algorithm for automated detection of proteins in two-dimensional electrophoresis gels.
133-139
- Kiyoshi Asai, Satoru Hayamizu, Ken'ichi Handa:
Prediction of protein secondary structure by the hidden Markov model.
141-146
- F. Sasagawa, K. Tajima:
Prediction of protein secondary structures by a neural network.
147-152
- Y. Matsuo, Minoru Kanehisa:
An approach to systematic detection of protein structural motifs.
153-159
- Makoto Hirosawa, Masaki Hoshida, Masato Ishikawa, Tomoyuki Toya:
MASCOT: multiple alignment system for protein sequences based on three- way dynamic programming.
161-167
- Webb Miller:
Building multiple alignments from pairwise alignments.
169-176
- Yves Van de Peer, Rupert De Wachter:
TREECON: a software package for the construction and drawing of evolutionary trees.
177-182
- K. Rohde, Peer Bork:
A fast, sensitive pattern-matching approach for protein sequences.
183-189
- Claudine Landes, Alain Hénaut, Jean-Loup Risler:
Dot-plot comparisons by multivariate analysis (DOCMA): a tool for classifying protein sequences.
191-196
- Gilbert Deléage, Christophe Geourjon:
An interactive graphic program for calculating the secondary structure content of proteins from circular dichroism spectrum.
197-199
- A. Jamie Cuticchia, Jonathan Arnold, William E. Timberlake:
PCAP: probe choice and analysis package - a set of programs to aid in choosing synthetic oligomers for contig mapping.
201-203
- Pasquale Petrilli:
Classification of protein sequences by their dipeptide composition.
205-209
- B. K. Kiong, Tin Wee Tan:
A hypertext-like approach to navigating through the GCG sequence analysis package.
211-214
- A. Jamie Cuticchia, Jonathan Arnold, William E. Timberlake:
ODS: ordering DNA sequences - a physical mapping algorithm based on simulated annealing.
215-219
- Barry S. Fagin, J. Gill Watt, R. Gross:
A special-purpose processor for gene sequence analysis.
221-226
- M. P. Mujumdar, C. K. Mitra:
Electrogenic property of Na+, K(+)-ATPase through computer simulation.
227-230
Volume 9,
Number 3,
June 1993
Articles
- T. Karasawa, K. Tabuchi, M. Fumoto, T. Yasukawa:
Development of simulation models for protein folding in a thermal annealing process - I: A simulation of BPTI folding by the pearl necklace model.
243-251
- N. N. Kozlov, E. I. Kugushev:
Computer simulation of tRNA secondary structure folding.
253-258
- Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara:
A deductive database system PACADE for analyzing 3-D and secondary structures of protein.
259-265
- Masato Ishikawa, Tomoyuki Toya, Masaki Hoshida, Katsumi Nitta, A. Ogiwara, Minoru Kanehisa:
Multiple sequence alignment by parallel simulated annealing.
267-273
- Jürgen Kleffe, E. Grau:
The joint distribution of patterns in random sequences with application to the RC-measure for expressivity.
275-283
- V. V. Panjukov:
Finding steady alignments: similarity and distance.
285-290
- A. Z. Maksyutov, E. S. Zagrebelnaya:
ADEPT: a computer program for prediction of protein antigenic determinants.
291-297
- G. Mehldau, G. Myers:
A system for pattern matching applications on biosequences.
299-314
- T. Rouxel, Antoine Danchin, Alain Hénaut:
METALGEN.DB: metabolism linked to the genome of Escherichia coli, a graphics-oriented database.
315-324
- A. D. Athanasiadis, A. A. Hatzopoulos, G. Theophilidis:
A data-acquisition system for the analysis of the isometric tension generated by an electrically stimulated skeletal muscle.
325-330
- D. N. Nedde, Matthew O. Ward:
Visualizing relationships between nucleic acid sequences using correlation images.
331-335
- D. W. Collins:
FISH: a guide to protein-coding DNA sequences in the GenBank database.
337-342
- Christophe Lefèvre, Joh-E Ikeda:
The position end-set tree: a small automaton for word recognition in biological sequences.
343-348
- Christophe Lefèvre, Joh-E Ikeda:
Pattern recognition in DNA sequences and its application to consensus foot-printing.
349-354
- J. Mrazek, J. Kypr:
UNIREP: a microcomputer program to find unique and repetitive nucleotide sequences in genomes.
355-360
- Osamu Gotoh:
Optimal alignment between groups of sequences and its application to multiple sequence alignment.
361-370
- Hedvig Hegyi, Sándor Pongor:
Predicting potential domain homologies from FASTA search results.
371-372
- Scott R. Presnell, Bruce I. Cohen, Fred E. Cohen:
MacMatch: a tool for pattern-based protein secondary structure prediction.
373-374
- Edward S. Chen, C. Asano, Daniel B. Davison:
Parallel alignment of DNA sequences on the Connection Machine CM-2.
375
Volume 9,
Number 4,
August 1993
Articles
- R. Heilig, M. Hausmann, W. Rens, J. A. Aten, C. Cremer:
Time-optimized analysis of slit-scan chromosome profiles on a general- purpose personal computer.
381-385
- Kun-Mao Chao, Ross C. Hardison, Webb Miller:
Locating well-conserved regions within a pairwise alignment.
387-396
- Shashank Date, Rajendra Kulkarni, Bhavna Kulkarni, Urmila Kulkarni-Kale, Ashok S. Kolaskar:
Multiple alignment of sequences on parallel computers.
397-402
- P. R. Hunter:
A numerical method for allocating microbial isolates to strain types when characterized by typing methods that are not 100% reproducible.
403-405
- Aleksandar Milosavljevic, Jerzy Jurka:
Discovering simple DNA sequences by the algorithmic significance method.
407-411
- A. Howard:
SCUM - simulation of cyanobacterial underwater movement.
413-419
- David B. Searls:
Doing sequence analysis with your printer.
421-426
- Norihiro Sakamoto, Toshihisa Takagi, Yasubumi Sakaki:
Development of the Overlapping Oligonucleotide Database and its application to signal sequence search of the human genome.
427-434
- E. S. Shpigelman, Edward N. Trifonov, Alexander Bolshoy:
CURVATURE: software for the analysis of curved DNA.
435-440
- H. M. Sauro:
SCAMP: a general-purpose simulator and metabolic control analysis program.
441-450
- A. Trubuil:
Analysis of one-dimensional electrophoregrams.
451-458
- Hiroshi Dohi, Mitsuru Ishizuka, Shinsei Minoshima, Nobuyoshi Shimizu:
GeneView: multi-language human gene mapping library with a graphical user interface.
459-464
- J. W. Brown:
A toolkit for creating three-dimensional RNA pencil models.
465-467
- J. H. Nash:
A computer program to calculate and design oligonucleotide primers from amino acid sequences.
469-471
- Z. Nesovic, George Harauz:
3DVISION: a program for display of three-dimensional wire models on a PC with VGA display.
472
- J. W. Brown:
A Macintosh Hypercard compilation of small subunit ribosomal RNA sequences.
473
- G. Smutzer:
A simple method for accessing and transferring nucleotide database files.
474
- W. X. Huang, M. I. Cohen, W. R. See:
A fast graphics printing program for neurophysiological data.
475-476
- A. C. Pandey, M. V. Suryanarayana, R. K. Vishwakarma:
A computer program in BASIC for estimation of LD50 of a chemical by Dixon's up and down method.
477-478
- J. M. Smith:
OLIGOGET - a computerized database system for controlling oligonucleotide production.
479-480
Volume 9,
Number 5,
October 1993
Articles
- A. M. Eroshkin, P. A. Zhilkin, V. I. Fomin:
Algorithm and computer program Pro_Anal for analysis of relationship between structure and activity in a family of proteins or peptides.
491-497
- Michael Q. Zhang, T. G. Marr:
A weight array method for splicing signal analysis.
499-509
- M. A. Shifman:
PFGE MAPPER: a tool to aid in the analysis of pulse field gel electrophoresis maps.
511-515
- D. Yee, M. G. Prior, L. Z. Florence:
Development of predictive models of laboratory animal growth using artificial neural networks.
517-522
- András Aszódi, William R. Taylor:
Connection topology of proteins.
523-529
- K. C. Yan, F. T. Chau:
SCANGRAPH: a program for digitization of graphs using an image scanner.
531-534
- A. Taberner, P. Castanera, E. Silvestre, Joaquín Dopazo:
Estimation of the intrinsic rate of natural increase and its error by both algebraic and resampling approaches.
535-540
- N. Prunella, Sabino Liuni, Marcella Attimonelli, Graziano Pesole:
FASTPAT: a fast and efficient algorithm for string searching in DNA sequences.
541-545
- G. Landini, J. W. Rippin:
Notes on the implementation of the mass-radius method of fractal dimension estimation.
547-550
- G. Muller, C. Gaspin, A. Etienne, E. Westhof:
Automatic display of RNA secondary structures.
551-561
- Pedro Mendes:
GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems.
563-571
- Hermann-Georg Holzhütter, A. Schwendel, T. Grune, J. Quedenau, W. Siems:
Estimation of steady-state flux rates in metabolic systems by computer simulations of radioactive tracer experiments.
573-580
- B. K. Kiong, Tin Wee Tan:
A general UNIX interface for biocomputing and network information retrieval software.
581-586
- Rainer Fuchs:
Block searches on VAX and Alpha computer systems.
587-591
- D. K. Green:
Driving multiple pulsed field electrophoresis devices from one personal computer.
593-596
- P. L. Partner, M. L. Smith, W. Spoor, M. I. Clarkson:
Computer simulation of selection in a hypothetical crop species.
597-605
- X. Salas, J. Portugal:
PERFILS: a program for the quantitative treatment of footprinting data.
607-610
Volume 9,
Number 6,
December 1993
Articles
- Alexander E. Kel, Mikhail P. Ponomarenko, E. A. Likhachev, Yuri L. Orlov, I. V. Ischenko, Luciano Milanesi, Nikolay A. Kolchanov:
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites.
617-627
- V. M. Balcao, F. X. Malcata:
STADEERS: a software package for the statistical design of experiments pertaining to the estimation of parameters in rate expressions that describe enzyme-catalyzed processes.
629-637
- D. Bordo:
ENVIRON: a software package to compare protein three-dimensional structures with homologous sequences using local structural motifs.
639-645
- Chiara Scapoli, A. Rodriguez-Larralde, Stefano Volinia, Italo Barrai:
Enrichment of oligonucleotide sets with transcription control signals. III: DNA from non-mammalian vertebrates.
647-651
- W. H. Day, Fred R. McMorris:
A consensus program for molecular sequences.
653-656
- M. Edwards, Roger E. Cooley:
Expertise in expert systems: knowledge acquisition for biological expert systems.
657-665
- M. T. Semertzidis, S. Deplanque, J. P. Mornon:
OMEGA: a three-dimensional databank for protein structures (a complement to PDB).
667-670
- Edgardo A. Ferrán, Bernard Pflugfelder:
A hybrid method to cluster protein sequences based on statistics and artificial neural networks.
671-680
- Salvatore Lanzavecchia, Pier Luigi Bellon, L. Tosoni:
FT3D: three-dimensional Fourier analysis on small Unix workstations for electron microscopy and tomographic studies.
681-685
- F. Giuliano, P. Arrigo, F. Scalia, P. P. Cardo, G. Damiani:
Potentially functional regions of nucleic acids recognized by a Kohonen's self-organizing map.
687-693
- Federico M. Stefanini, A. Camussi:
APLOGEN: an object-oriented genetic algorithm performing Monte Carlo optimization.
695-700
- Sabino Liuni, N. Prunella, Graziano Pesole, Tiziana D'Orazio, Ettore Stella, Arcangelo Distante:
SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences.
701-707
- C. M. Henneke:
Protein motif by computer: the perfect Greek key jellyroll designer.
709-722
- S. J. Taylor, R. A. Rastall, J. T. Sykes, S. C. Winter, C. Bucke:
Primary sequence analysis and representation techniques in carbohydrates.
723-728
- Geoffrey J. Barton:
An efficient algorithm to locate all locally optimal alignments between two sequences allowing for gaps.
729-734
- Peter De Rijk, Rupert De Wachter:
DCSE, an interactive tool for sequence alignment and secondary structure research.
735-740
- M. O. Ortells, V. B. Cockcroft, G. G. Lunt:
CEDIT: a C interface and macro facility for protein sequence alignment editing in colour with Microsoft Word 5.0 for PCs.
741-744
- C. D. Livingstone, Geoffrey J. Barton:
Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation.
745-756
- B. E. Nichols, Val C. Sheffield, Edwin M. Stone:
A user-friendly Hypercard interface for human linkage analysis.
757-759
- A. Luttke, Rainer Fuchs:
MacP12: a protein property multi-profile plot program for the Apple Macintosh.
760-761
Copyright © Fri Nov 27 19:49:23 2009
by Michael Ley (ley@uni-trier.de)
