Volume 31, Number 1, February 2007
- Andrea Sackmann, Dorota Formanowicz, Piotr Formanowicz, Ina Koch, Jacek Blazewicz:
An analysis of the Petri net based model of the human body iron homeostasis process.
1-10
- Howard A. Levine, Marit Nilsen-Hamilton:
A mathematical analysis of SELEX.
11-35
- Christian J. Michel:
Codon phylogenetic distance.
36-43
- Majid Kazemian, Behzad Moshiri, Hamid Nikbakht, Caro Lucas:
A new expertness index for assessment of secondary structure prediction engines.
44-47
- Zhenqiang Su, Huixiao Hong, Roger Perkins, Xueguang Shao, Wensheng Cai, Weida Tong:
Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data.
48-56
- Andrey A. Toropov, Emilio Benfenati:
SMILES as an alternative to the graph in QSAR modelling of bee toxicity.
57-60
Brief Communication
Volume 31, Number 2, April 2007
- Fang Liu, Baolin Wu:
Multi-group cancer outlier differential gene expression detection.
65-71
- D. Yu. Mordvintsev, Ya. L. Polyak, D. A. Kuzmin, Olga V. Levtsova, Ye. V. Tourleigh, Yu. N. Utkin, Konstantin V. Shaitan, V. I. Tsetlin:
Computer modeling of binding of diverse weak toxins to nicotinic acetylcholine receptors.
72-81
- N. S. Gomathi, H. Sameer, Vanaja Kumar, S. Balaji, V. N. Azger Dustackeer, P. R. Narayanan:
In silico analysis of mycobacteriophage Che12 genome: Characterization of genes required to lysogenise Mycobacterium tuberculosis.
82-91
- Raad Z. Gharaibeh, Anthony Fodor, Cynthia Gibas:
Software Note: Using probe secondary structure information to enhance Affymetrix GeneChip background estimates.
92-98
- H. H. Haeri, S. M. Hashemianzadeh, M. Monajjemi:
A kinetic Monte Carlo simulation study of inositol 1, 4, 5-trisphosphate receptor (IP3R) calcium release channel.
99-109
- Jack Xiao-Dong Yang, Roderick V. N. Melnik:
Effect of internal viscosity on Brownian dynamics of DNA molecules in shear flow.
110-114
- Armando Hernandez-Mendoza, Carmen Quinto, Lorenzo Segovia, Ernesto Pérez-Rueda:
Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins.
115-123
Brief Communications
- Wei-Bo Jin, Fang-Li Wu, Dong Kong, Ai-Guang Guo:
HBV-encoded microRNA candidate and its target.
124-126
- Andrey A. Toropov, Danuta Leszczynska, Jerzy Leszczynski:
Predicting water solubility and octanol water partition coefficient for carbon nanotubes based on the chiral vector.
127-128
- Yuan Zhang, Nan Zheng, Yang Zhong:
Computational characterization and design of SARS coronavirus receptor recognition and antibody neutralization.
129-133
- Yuan Zhang, Nan Zheng, Peng Nan, Ying Cao, Masami Hasegawa, Yang Zhong:
Computational simulation of interactions between SARS coronavirus spike mutants and host species-specific receptors.
134-137
- Anuj R. Shah, Christopher S. Oehmen, Jill Harper, Bobbie-Jo M. Webb-Robertson:
Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms.
138-142
Database Note
Technical Comment
Volume 31, Number 3, June 2007
- William R. Taylor:
Protein knots and fold complexity: Some new twists.
151-162
- Bjørn Altermark, Steinar Thorvaldsen, Elin Moe, Arne O. Smalås, Nils Willassen:
Sequence comparison and environmental adaptation of a bacterial endonuclease.
163-172
- Nadezhda M. Belonogova, Tatiana I. Axenovich:
Optimal peeling order for pedigrees with incomplete genotypic information.
173-177
- Arief Gusnanto, Brian Tom, Philippa Burns, Iain Macaulay, Daphne C. Thijssen-Timmer, Marloes R. Tijssen, Cordelia Langford, Nicholas Watkins, Willem Ouwehand, Carlo Berzuini, Frank Dudbridge:
Improving the power to detect differentially expressed genes in comparative microarray experiments by including information from self-self hybridizations.
178-185
- Zhili Zuo, Chen Gang, Hanjun Zou, Puah Chum Mok, Weiliang Zhu, Kaixian Chen, Hualiang Jiang:
Why does beta-secretase zymogen possess catalytic activity? Molecular modeling and molecular dynamics simulation studies.
186-195
- Susan Costantini, Giovanni Colonna, Angelo M. Facchiano:
Simulation of conformational changes occurring when a protein interacts with its receptor.
196-206
- Atsushi Inouchi, Shuichi Shinohara, Hiroshi Inoue, Kenji Kita, Mitsuo Itakura:
Identification of specific sequence motifs in the upstream region of 242 human miRNA genes.
207-214
Software/Algorithm Notes
Volume 31, Number 4, August 2007
- Shinuk Kim, Junil Kim, Kwang-Hyun Cho:
Inferring gene regulatory networks from temporal expression profiles under time-delay and noise.
239-245
- Hae-Seok Eo, Jae Pil Choi, Seung-Jae Noh, Cheol-Goo Hur, Won Kim:
A combined approach for the classification of G protein-coupled receptors and its application to detect GPCR splice variants.
246-256
- Jianmiao Fan, Kagan Tuncay, Peter J. Ortoleva:
Chromosome segregation in Escherichia coli division: A free energy-driven string model.
257-264
- Joon Jin Song, Ho-Jin Lee, Jeffrey S. Morris, Sanghoon Kang:
Clustering of time-course gene expression data using functional data analysis.
265-274
- Yee Leng Yap, Xue Wu Zhang, David Smith, Richie Soong, Jeffrey Hill:
Molecular gene expression signature patterns for gastric cancer diagnosis.
275-287
Algorithm note
Brief communication
- M. James C. Crabbe:
Global warming and coral reefs: Modelling the effect of temperature on Acropora palmata colony growth.
294-297
Database note
Erratum
- Ernesto Estrada, Eugenio Uriarte:
Erratum to "Folding degrees of azurins and pseudoazurins. Implications for structure and function" [Computational Biology and Chemistry 29 (2005) 345-353].
303
Volume 31, Numbers 5-6, October 2007
Regular Articles
- Sabine Verboven, Karlien Vanden Branden, Peter Goos:
Sequential imputation for missing values.
320-327
- MunJu Kim, Songjoon Baek, Sung Hoon Jung, Kwang-Hyun Cho:
Dynamical characteristics of bacteria clustering by self-generated attractants.
328-334
- Aaron M. Fluitt, Elsje Pienaar, Hendrik J. Viljoen:
Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis.
335-346
- Soohee Han, Yeoin Yoon, Kwang-Hyun Cho:
Inferring biomolecular interaction networks based on convex optimization.
347-354
- Dong He, Dao Zhou, Yanhong Zhou:
Identifying transcription factor targets using enhanced Bayesian classifier.
355-360
- Mingyi Wang, Zuozhou Chen, Sylvie Cloutier:
A hybrid Bayesian network learning method for constructing gene networks.
361-372
Brief Communications
Software Note
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