Volume 6, Number 1, 2010
Yunho Jang, Xiu-Feng Wan: Development of Chemical Bond based Elastic Network Model and its application in identifying functional motions in H5N1 highly pathogenic avian influenza viruses. 1-11
Ganqiang Liu, Min Ding, Haiyun Wang, Jinyan Huang, Qing Jing, Bairong Shen: Pathway analysis of microRNAs in mouse heart development. 12-20
Vinhthuy Phan, Allen Thomas, Kriangsiri Malasri, Carrie Hayes Sutter: Stability of RNA structural motifs and its influence on editing efficiency by adenosine deaminases. 21-36
Javid Taheri, Albert Y. Zomaya: RBT-L: A location based approach for solving the Multiple Sequence Alignment problem. 37-57

Svetlana Torgasin, Karl-Heinz Zimmermann: Algorithm for thermodynamically based prediction of DNA/DNA cross-hybridisation. 82-97
Volume 6, Number 2, 2010
Roger L. Chang, Feng Luo, Stuart Johnson, Richard H. Scheuermann: Deterministic graph-theoretic algorithm for detecting modules in biological interaction networks. 101-119
David A. McClellan, David D. Ellison: Assessing and improving the accuracy of detecting protein adaptation with the TreeSAAP analytical software. 120-133
Petr Danecek, Catherine H. Schein: Flavitrack analysis of the structure and function of West Nile non-structural proteins. 134-146
Abanish Singh, Umeshkumar Keswani, David Levine, Cédric Feschotte, Nikola Stojanovic: An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes. 147-162
TuShun R. Powers, Selene M. Virk, Elba E. Serrano: Strategies for enhanced annotation of a microarray probe set. 163-178
Sumeet Dua, Pradeep Chowriappa, Alan E. Alex: Ranking through integration of protein-similarity for identification of cell-cyclic genes. 179-190
Mona Soliman Habib, Jugal Kalita: Scalable biomedical Named Entity Recognition: investigation of a database-supported SVM approach. 191-208
Volume 6, Number 3, 2010
Rakesh Kumar Shardiwal, S. S. Sohrab: A more elaborative way to check codon quality: an open source program. 223-229
Vipan Kumar Sohpal, Apurba Dey, Amarpal Singh: MEGA biocentric software for sequence and phylogenetic analysis: a review. 230-240
Vibhu Ranjan Prasad, Bhumi Nath Tripathi, Rao Sethumadhavan: Distinct role of non-covalent interactions to the function and structural stability of glutaredoxins: a multifunctional redox protein. 241-259
Michael Arock, Srinivasulu Reddy, A. V. Reddy: A parallel combinatorial algorithm for subtle motifs. 260-269
Hisham Al-Mubaid, Rajit K. Singh: A text-mining technique for extracting gene-disease associations from the biomedical literature. 270-286
Amit Kumar, Shakuntala Bulusu, Vijayalakshmi Kasu, Kondala Rao: Characterisation of simple sequence repeats from human ESTs and creation of a comprehensive data base. 287-295
Mingjun Song, Sanguthevar Rajasekaran: A greedy algorithm for gene selection based on SVM and correlation. 296-307
Zengti Li, Suogang Gao, Hongjie Du, Yan Shi, Weili Wu: New algebraic constructions for pooling design in DNA library screening. 308-322
Volume 6, Number 4, 2010
Bradley M. Broom, Erik P. Sulman, Kim-Anh Do, Mary E. Edgerton, Kenneth D. Aldape: Bagged gene shaving for the robust clustering of high-throughput data. 326-343
Manik Dhawan, Sudarshan Selvaraja, Zhong-Hui Duan: Application of committee kNN classifiers for gene expression profile classification. 344-352
Yinglei Lai: Differential expression analysis of Digital Gene Expression data: RNA-tag filtering, comparison of t-type tests and their genome-wide co-expression based adjustments. 353-365
Fangrui Ma, Jitender S. Deogun: Multiple genome alignment based on longest path in directed acyclic graphs. 366-383
Suzette Stoutenburg, Jugal Kalita, Kaily Ewing, Lisa Hines: Scaling alignment of large ontologies. 384-401
Younhee Ko, ChengXiang Zhai, Sandra L. Rodriguez-Zas: Discovery of gene network variability across samples representing multiple classes. 402-417
Mahua Bhattacharya, Arpita Das: Identification of tiny and large calcification in breast: a study on mammographic image analysis. 418-434
Volume 6, Number 5, 2010
Jianjun Yan, Xiaojing Shen, Yiqin Wang, Fufeng Li, Chunming Xia, Rui Guo, Chunfeng Chen, Qingwei Shen: Objective research of auscultation signals in Traditional Chinese Medicine based on wavelet packet energy and Support Vector Machine. 435-448
Haixin Ai, Fangliang Zheng, Chunyu Zhu, Tingting Sun, Li Zhang, Xue Liu, Xuejiao Li, Guangyu Zhu, Hongsheng Liu: Discovery of novel influenza inhibitors targeting the interaction of dsRNA with the NS1 protein by structure-based virtual screening. 449-460
G. Sudha Sadasivam, G. Baktavatchalam: A novel approach to Multiple Sequence Alignment using hadoop data grids. 472-483
Yuemin Liu, August A. Gallo, Rakesh K. Bajpai, Andrei Chistoserdov, Andrew T. Nelson, Leah N. Segura, Wu Xu: The diversity and molecular modelling analysis of B12-dependent and B12-independent glycerol dehydratases. 484-507
M. Ruhul Amin, A. H. M. Mahbub, Abdur R. Sikder, M. Manjurul Karim: Prediction of the post-translational modification sites on dengue virus E protein and deciphering their role in pathogenesis. 508-521
Lalit Ponnala: Detecting slow-translating regions in E.coli. 522-530
Volume 6, Number 6, 2010
Jayant Mishra, Amit Kumar, Amita Sinha, Silpa Das, Akash Srivastava: Ingenuity in pattern recognition: a novel bioinformatics approach towards lung cancer identification. 531-541
Thomas K. F. Wong, Tak Wah Lam, Siu-Ming Yiu, Simon C. K. Wong: Improving the accuracy of signal transduction pathway construction using level-2 neighbours. 542-555
R. Sumi Pandian, K. Hemavathi, R. Jayapradha, R. Seenivasagam: In-silico analysis and QSAR studies of tacrine hybrids with ubiquitin ligase on Alzheimer's disease. 556-570
Russell L. Malmberg, Timothy I. Shaw, Liming Cai: RNApasta: a tool for analysis of RNA structural alignments. 571-583
Daniel P. Gaile, Lori A. Shepherd, Andrew E. Bruno, Song Liu, Carl D. Morrison, Lara E. Sucheston, Jeffrey C. Miecznikowski: iGenomicViewer: R package for visualisation of high dimension genomic data. 584-593
Gábor Iván, Zoltan Szabadka, Vince Grolmusz: Cysteine and tryptophan anomalies found when scanning all the binding sites in the Protein Data Bank. 594-608
Muhammed S. Al-Mulhem: Multithreaded parsing for predicting RNA secondary structures. 609-621
ChangKug Kim, Jung-Sook Lee, UngHan Yoon, GangSeob Lee, HwanKi Lee, JiWeon Choi: Computational identification of genetic markers for selecting genes in rice and Chinese cabbage. 622-627
Blaise Hanczar, Corneliu Henegar, Jean-Daniel Zucker: Exploring interaction measures to identify informative pairs of genes. 628-642



