International Journal of Data Mining and Bioinformatics, Volume 2

Volume 2, Number 1, 2008

Fang-Xiang Wu:
Gene Regulatory Network modelling: a state-space approach. 1-14
Rong Jiang, Hong Yan:
Segmentation of short human exons based on spectral features of double curves. 15-35
Nicolas Turenne, Sylviane R. Schwer:
Temporal representation for gene networks: towards a qualitative temporal data mining. 36-53
Peddinti V. Gopalacharyulu, Erno Lindfors, Jarkko Miettinen, Catherine Bounsaythip, Matej Oresic:
An integrative approach for biological data mining and visualisation. 54-77
Xuezheng Fu, Hao Wang, Robert W. Harrison, William L. Harrison:
A rule-based approach for RNA pseudoknot prediction. 78-93

Huimin Geng, Xutao Deng, Hesham H. Ali:
Message Passing Clustering (MPC): a knowledge-based framework for clustering under biological constraints. 95-120
Jack Y. Yang, Mary Qu Yang:
Identification of Intrinsically Unstructured Proteins using hierarchical classifier. 121-133
Li-Juan Zhang, Zhou-Jun Li, Huo-Wang Chen:
Handling gene redundancy in microarray data using Grey Relational Analysis. 134-144
Xue-wen Chen, Bing Han, Jianwen Fang, Ryan J. Haasl:
Large-scale Protein-Protein Interaction prediction using novel kernel methods. 145-156
Pai-Hsi Huang, Vladimir Pavlovic:
Protein homology detection with biologically inspired features and interpretable statistical models. 157-175
Hyun-Woo Cho, Seoung Bum Kim, Myong Kee Jeong, Youngja Park, Nana Gletsu Miller, Thomas R. Ziegler, Dean P. Jones:
Discovery of metabolite features for the modelling and analysis of high-resolution NMR spectra. 176-192

Bill Andreopoulos, Dimitra Alexopoulou, Michael Schroeder:
Word Sense Disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering. 193-215
Spiridon C. Denaxas, Christos Tjortjis:
Scoring and summarising gene product clusters using the Gene Ontology. 216-235
Weixiang Liu, Kehong Yuan:
Sparse p-norm Nonnegative Matrix Factorization for clustering gene expression data. 236-249
Rong Jin, Luo Si, Christina Chan:
A Bayesian framework for knowledge driven regression model in micro-array data analysis. 250-267

Inke R. König, James D. Malley, Sinisa Pajevic, Christian Weimar, Hans-Christoph Diener, Andrea Ziegler:
Patient-centered yes/no prognosis using learning machines. 289-341
Cui Lin, Shiyong Lu, Xuwei Liang, Jing Hua, Otto Muzik:
Cocluster analysis of thalamo-cortical fibre tracts extracted from diffusion tensor MRI. 342-361
Massimo Buscema, Enzo Grossi:
The semantic connectivity map: an adapting self-organising knowledge discovery method in data bases. Experience in gastro-oesophageal reflux disease. 362-404
Tuan D. Pham:
Computational prediction models for cancer classification using mass spectrometry data. 405-422