International Journal of Data Mining and Bioinformatics, Volume 3

Volume 3, Number 1, 2009

• Kuan-Ming Lin, Jaewoo Kang, Hanjun Shin, Jusang Lee:
  A cube framework for incorporating inter-gene information into biological data mining. 3-22
  
• Yin-Fu Huang, Yi-Chao Jhan, Sing-Wu Liou:
  Finding new Core Promoter Elements using backward-looking strategies. 23-39
  
• Mathew Palakal, Pavithra Naidu:
  An on demand data integration model for biological databases. 40-54
  
• Yasir Arafat, Joarder Kamruzzaman, Gour C. Karmakar, Juan Fernández-Recio:
  Predicting protein - protein interfaces as clusters of Optimal Docking Area points. 55-67
  
• Shi-Hua Zhang, Hong-Wei Liu, Xue-Mei Ning, Xiang-Sun Zhang:
  A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks. 68-84
  
• Xue-Qiang Zeng, Guo-Zheng Li, Gengfeng Wu, Jack Y. Yang, Mary Qu Yang:
  Irrelevant gene elimination for Partial Least Squares based Dimension Reduction by using feature probes. 85-103
  

Volume 3, Number 2, 2009

• Kazuhiro Seki, Javed Mostafa:
  Discovering implicit associations among critical biological entities. 105-123
  
• Bin Song, Padmavati Sridhar, Tamer Kahveci, Sanjay Ranka:
  Double iterative optimisation for metabolic network-based drug target identification. 124-144
  
• Miew Keen Choong, David Levy, Hong Yan:
  Study of microarray time series data based on Forward-Backward Linear Prediction and Singular Value Decomposition. 145-159
  
• Arnaud Fontaine, Hélène Touzet:
  Computational identification of protein-coding sequences by comparative analysis. 160-176
  
• Lei Yu:
  Feature cluster selection for high-throughput data analysis. 177-191
  
• Feng Yue, Jijun Tang:
  A space-efficient algorithm for three sequence alignment and ancestor inference. 192-204
  
• Frank DiMaio, Ameet Soni, George N. Phillips, Jude W. Shavlik:
  Spherical-harmonic decomposition for molecular recognition in electron-density maps. 205-227
  

Volume 3, Number 3, 2009

• Kevin Y. Yip, Lin Cheung, David W. Cheung, Liping Jing, Michael K. Ng:
  A semi-supervised approach to projected clustering with applications to microarray data. 229-259
  
• Dietmar H. Dorr, Anne M. Denton:
  Clustering sequences by overlap. 260-279
  
• Antonio Ruiz, Olcay Sertel, Manuel Ujaldon, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan:
  Stroma classification for neuroblastoma on graphics processors. 280-298
  
• Yutaka Sasaki, Brian Rea, Sophia Ananiadou:
  Clinical text classification under the Open and Closed Topic Assumptions. 299-313
  
• Quan Wen, Kate Luby-Phelps, Jean Gao:
  Tracking multiple interacting subcellular structure by sequential Monte Carlo method. 314-332
  
• Young-Rae Cho, Aidong Zhang, Xian Xu:
  Semantic similarity based feature extraction from microarray expression data. 333-345
  
• Kamal Al-Nasr, Jing He:
  An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent. 346-361