International Journal of Data Mining and Bioinformatics, Volume 5

Volume 5, Number 1, 2011

• Jun Ding, Yuzhen Gao, Yan He, Yifeng Zhou, Moli Huang, Haiyan Liu:
  Screening SNPs residing in the microRNA-binding sites of Hepatocellular Carcinoma related genes. 1-21
  
• Qinqin Wu, Jiajun Wang, Hong Yan:
  An Improved Position Weight Matrix method based on an entropy measure for the recognition of prokaryotic promoters. 22-37
  
• Hae-Jin Hu, Robert W. Harrison, Phang C. Tai, Yi Pan:
  Understandable learning machine system design for Transmembrane or Embedded Membrane segments prediction. 38-51
  
• Tamara Polajnar, Simon Rogers, Mark Girolami:
  Protein interaction detection in sentences via Gaussian Processes: a preliminary evaluation. 52-72
  
• Jiarui Ding, Jin-Hong Shi, Fang-Xiang Wu:
  SVM-RFE based feature selection for tandem mass spectrum quality assessment. 73-88
  
• Lien-Chin Chen, Philip S. Yu, Vincent S. Tseng:
  WF-MSB: A weighted fuzzy-based biclustering method for gene expression data. 89-109
  
• Malaya Kumar Hota, Vinay Kumar Srivastava:
  Improvement in protein-coding region identification based on sliding window trigonometric fast transforms using Singular Value Decomposition. 110-127
  

Volume 5, Number 2, 2011

• Sejoon Lee, Eunjung Lee, Kwang H. Lee, Doheon Lee:
  Predicting disease phenotypes based on the molecular networks with Condition-Responsive Correlation. 131-142
  
• Stan Pounds, Xueyuan Cao, Cheng Cheng, Jun J. Yang, Dario Campana, Ching-Hon Pui, William E. Evans, Mary Relling:
  Integrated analysis of pharmacologic, clinical and SNP microarray data using Projection Onto the Most Interesting Statistical Evidence with Adaptive Permutation Testing. 143-157
  
• Qing He, Kevin Karsch, Ye Duan:
  Semi-automatic 3D segmentation of brain structures from MRI. 158-173
  
• Yi Lu, Jeffrey L. Ram:
  Predictions of flexible C-terminal tethers of bacterial proteins with the FLEXTAIL bioinformatics pipeline. 174-188
  
• Liang Lan, Slobodan Vucetic:
  Improving accuracy of microarray classification by a simple multi-task feature selection filter. 189-208
  
• Timur Fayruzov, Jeroen Janssen, Dirk Vermeir, Chris Cornelis, Martine De Cock:
  Modelling gene and protein regulatory networks with Answer Set Programming. 209-229
  

Volume 5, Number 3, 2011

• Yoon Soo Pyon, Xin Li, Jing Li:
  Cancer progression analysis based on ordinal relationship of cancer stages and co-expression network modularity. 233-251
  
• Stuart J. Nelson, Kelly Zeng, John Kilbourne:
  Building a standards-based and collaborative e-prescribing tool: MyRxPad. 252-265
  
• Darío Rojas, Luis Rueda, Alioune Ngom, Homero Urrutia, Gerardo Carcamo:
  Image segmentation of biofilm structures using optimal multi-level thresholding. 266-286
  
• Sara Nasser, Aarati R. Ranade, Shravan Sridhart, Lisa Haney, Ronald L. Korn, Michael B. Gotway, Glen J. Weiss, Seungchan Kim:
  Biomarkers associated with metastasis of lung cancer to brain predict patient survival. 287-307
  
• Dayu Lv, Bill Goodwine:
  Pancreas modelling by a deterministic optimisation method. 308-320
  
• Mark J. O'Connor, Anja E. Hauser, Ann M. Haberman, Steven H. Kleinstein:
  Activated germinal centre B cells undergo directed migration. 321-331
  
• Mohammed Al-Shalalfa, Ghada Naji, Ala Qabaja, Reda Alhajj, Jon G. Rokne:
  Combining multiple perspective as intelligent agents into robust approach for biomarker detection in gene expression data. 332-350
  

Volume 5, Number 4, 2011

• Simon K. Poon, Josiah Poon, Martin McGrane, Xuezhong Zhou, Paul W. Kwan, Runsun Zhang, Baoyan Liu, Junbin Gao, Clement Loy, Kelvin Chan, Daniel Man-yuen Sze:
  A novel approach in discovering significant interactions from TCM patient prescription data. 353-368
  
• Yiqin Wang, Haixia Yan, Rui Guo, Fufeng Li, Chunming Xia, Jianjun Yan, Zhaoxia Xu, Guoping Liu, Jin Xu:
  Study on intelligent syndrome differentiation in Traditional Chinese Medicine based on multiple information fusion methods. 369-382
  
• Mingyu You, Rui-Wei Zhao, Guo-Zheng Li, Xiaohua Hu:
  MAPLSC: A novel multi-class classifier for medical diagnosis. 383-401
  
• Vincent S. Tseng, Hsieh-Hui Yu:
  Microarray data classification by multi-information based gene scoring integrated with Gene Ontology. 402-416
  
• Upadhyayula Suryanarayana Murty, Mutheneni Srinivasa Rao, K. Sriram, K. Madhusudha Rao:
  Applications of Self-Organising Map (SOM) for prioritisation of endemic zones of filariasis in Andhra Pradesh, India. 417-427
  
• Jianping Zhou, Georges G. Grinstein, Kenneth A. Marx:
  A heuristic for gene selection and visual prediction of sample type. 428-448
  
• Watshara Shoombuatong, Patrinee Traisathit, Sukon Prasitwattanaseree, Chatchai Tayapiwatana, Robert W. Cutler, Jeerayut Chaijaruwanich:
  Prediction of the disulphide bonding state of cysteines in proteins using Conditional Random Fields. 449-464
  

Volume 5, Number 5, 2011

• Chuang Ma, Jia Wang, Lun Li, Mo-Jie Duan, Yanhong Zhou:
  Identification of true EST alignments for recognising transcribed regions. 465-484
  
• Qian Xu, Hong Xue, Qiang Yang:
  Multi-platform gene-expression mining and marker gene analysis. 485-503
  
• Dongjun Chung, Hyunjoong Kim:
  Robust classification ensemble method for microarray data. 504-518
  
• Le Lu, Yanda Li, Shao Li:
  Computational identification of potential microRNA network biomarkers for the progression stages of gastric cancer. 519-531
  
• Wen-Ran Zhang, Anand K. Pandurangi, Karl E. Peace, Yan-Qing Zhang, Zhongming Zhao:
  MentalSquares: A generic bipolar Support Vector Machine for psychiatric disorder classification, diagnostic analysis and neurobiological data mining. 532-557
  
• Jesús S. Aguilar-Ruiz, Domingo S. Rodríguez-Baena, Norberto Díaz-Díaz, Isabel A. Nepomuceno-Chamorro:
  CarGene: Characterisation of sets of genes based on metabolic pathways analysis. 558-573
  
• Waren N. Baticados, Noboru Inoue, Chihiro Sugimoto, Hideyuki Nagasawa, Abigail M. Baticados:
  Complete coding sequence, sequence analysis and transmembrane topology modelling of Trypanosoma brucei rhodesiense Putative Oligosaccharyl transferase (TbOST II). 574-592
  

Volume 5, Number 6, 2011

• Peng-Gang Sun, Lin Gao, Jia Song:
  Identification of conserved protein complexes by module alignment. 593-610
  
• Kang Ning, Hoong Kee Ng, Hon Wai Leong:
  Analysis of the relationships among Longest Common Subsequences, Shortest Common Supersequences and patterns and its application on pattern discovery in biological sequences. 611-625
  
• Liupu Wang, Juexin Wang, Michael Wang, Yanchun Liang, Dong Xu:
  User experience evaluation of Google search for obtaining medical knowledge: a case study. 626-639
  
• Yifei Chen, Feng Liu, Bernard Manderick:
  A machine learning-based system to normalise gene mentions to unique database identifiers. 640-660
  
• Rong Jiang, Hong Yan:
  Detection and 2-Dimensional display of short tandem repeats based on signal decomposition. 661-690
  
• Chris Haddow, Justin Perry, Marcus Durrant, Joe Faith:
  Predicting functional residues of protein sequence alignments as a feature selection task. 691-705
  
• Neeta Sarkar-Roy, Debabrata Mondal, Paramita Bhattacharya, Partha Majumder:
  A novel statistical algorithm for enhancing the utility of HapMap data to design genomic association studies in non-HapMap populations. 706-716
  

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