In Silico Biology, Volume 1

Volume 1, 1998

• Edgar Wingender:
  ISB: Just another journal? 1
  Electronic Edition (link) BibTeX
• Andreas D. Baxevanis, David Landsman:
  Homology model building of Hho1p supports its role as a yeast histone H1 protein. 2
  Electronic Edition (link) BibTeX
• Thomas Junier, Philipp Bucher:
  SEView: a Java applet for browsing molecular sequence data. 3
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• Emmanuelle Roulet, Igor Fisch, Thomas Junier, Philipp Bucher, Nicolas Mermod:
  Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA. 4
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• Kornelie Frech, Kerstin Quandt, Thomas Werner:
  Muscle actin genes: A first step towards computational classification of tissue specific promoters. 5
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• Ralf Hofestädt, S. Thelen:
  Quantitative modeling of biochemical networks. 6
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• Michael Y. Galperin, Eugene V. Koonin:
  Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement, and operon disruption. 7
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• L. Aravind:
  An evolutionary classification of the metallo-beta-lactamase fold proteins. 8
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• Ross A. Overbeek, Michael Fonstein, Mark D'Souza, Gordon D. Pusch, Natalia Maltsev:
  Use of contiguity on the chromosome to predict functional coupling. 9
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• Vladimir Brusic, Peter van Endert, John Zeleznikow, Soizic Daniel, Jürgen Hammer, Nikolai Petrovsky:
  A neural network model approach to the study of human TAP transporter. 10
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• Claude Prigent, Rob Gill, Mike Trower, Philippe Sanseau:
  In silico cloning of a new protein kinase, Aik2, related to Drosophila aurora using the new tool: EST Blast. 11
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• Takako Takai-Igarashi, Tsuguchika Kaminuma:
  A Pathway Finding System for the Cell Signaling Networks Database. 12
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• Anne Bergeron, Paul Geanta, Dominique Bergeron:
  The Death factors: a combinatorial analysis. 13
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• Vassilis J. Promponas, G. A. Palaios, C. M. Pasquier, J. S. Hamodrakas, Stavros J. Hamodrakas:
  CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods. 14
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Volume 1, 1999

• Sharmila Banerjee-Basu, David Landsman, Andreas D. Baxevanis:
  Homology model building of prospero-type homeodomains. 15
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• Janusz M. Bujnicki:
  Comparison of protein structures reveals monophyletic origin of AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation. 16
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• Andrei E. Gabrielian, David Landsman, Alexander Bolshoy:
  Curved DNA in promoter sequences. 17
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• Rob M. Ewing, Olivier Poirot, Jean-Michel Claverie:
  Comparative analysis of the Arabidopsis and rice Expressed Sequence Tag (EST) sets. 18
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Volume 1, 2000

• Niels Grabe:
  AliBaba2: Context specific identification of transcription factor binding sites. 19
  Electronic Edition (link) BibTeX
• Andreas Klingenhoff, Kornelie Frech, Thomas Werner:
  Regulatory modules shared within gene classes as well as across gene classes can be detected by the same in silico approach. 20
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• Susan B. Davidson, Christian J. Stoeckert Jr.:
  In Memory of Chris Overton. 21
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• Edgar Wingender, Thomas Werner:
  In Memory of Dan Prestridge. 22
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• Daphne Q.-D. Pham:
  Molecular modeling of insect ferritins. 23
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