Volume 12,
Number 1,
Februar 2005
- Andrei S. Rodin, Thomas H. Mosley Jr., Andrew G. Clark, Charles F. Sing, Eric Boerwinkle:
Mining Genetic Epidemiology Data with Bayesian Networks Application to APOE Gene Variation and Plasma Lipid Levels.
1-11
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- Golan Yona, Klara Kedem:
The URMS-RMS Hybrid Algorithm for Fast and Sensitive Local Protein Structure Alignment.
12-32
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- Elodie Nédélec, Thomas Moncion, Elisabeth Gassiat, Bruno Bossard, Guillemette Duchateau-Nguyen, Alain Denise, Michel Termier:
A Pairwise Alignment Algorithm Which Favors Clusters of Blocks.
33-47
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- Jason W. Zwolak, John J. Tyson, Layne T. Watson:
Parameter Estimation for a Mathematical Model of the Cell Cycle in Frog Eggs.
48-63
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- Konstantinos Blekas, Dimitrios I. Fotiadis, Aristidis Likas:
Motif-Based Protein Sequence Classification Using Neural Networks.
64-82
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- Peter Clote:
An Efficient Algorithm to Compute the Landscape of Locally Optimal RNA Secondary Structures with Respect to the NussinovJacobson Energy Model.
83-101
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- Ying Chih Lin, Chin Lung Lu, Hwan-You Chang, Chuan Yi Tang:
An Efficient Algorithm for Sorting by Block-Interchanges and Its Application to the Evolution of Vibrio Species.
102-112
Electronic Edition (link) BibTeX
Volume 12,
Number 2,
March 2005
- Joël R. Pradines, Victor Farutin, Steve Rowley, Vlado Dancík:
Analyzing Protein Lists with Large Networks: Edge-Count Probabilities in Random Graphs with Given Expected Degrees.
113-128
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- Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu, Tao Jiang:
More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling.
129-146
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- Yun S. Song, Jotun Hein:
Constructing Minimal Ancestral Recombination Graphs.
147-169
Electronic Edition (link) BibTeX
- Lei M. Li, Henry Horng-Shing Lu:
Explore Biological Pathways from Noisy Array Data by Directed Acyclic Boolean Networks.
170-185
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- Asger Hobolth, Jens Ledet Jensen:
Applications of Hidden Markov Models for Characterization of Homologous DNA Sequences with a Common Gene.
186-203
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- Bernd Sturmfels, Seth Sullivant:
Toric Ideals of Phylogenetic Invariants.
204-228
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- Biao Xing, Mark J. van der Laan:
A Statistical Method for Constructing Transcriptional Regulatory Networks Using Gene Expression and Sequence Data.
229-246
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- Yuval Nov, Lawrence M. Wein:
Modeling and Analysis of Protein Design under Resource Constraints.
247-282
Electronic Edition (link) BibTeX
Volume 12,
Number 3,
April 2005
- Michael C. Wendl:
Probabilistic Assessment of Clone Overlaps in DNA Fingerprint Mapping via a Priori Models.
283-297
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- Yuting Jia, T. Gregory Dewey:
A Random Polymer Model of the Statistical Significance of Structure Alignment.
298-313
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- Libi Hertzberg, Or Zuk, Gad Getz, Eytan Domany:
Finding Motifs in Promoter Regions.
314-330
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- Ming-Ying Leung, Kwok Pui Choi, Aihua Xia, Louis H. Y. Chen:
Nonrandom Clusters of Palindromes in Herpesvirus Genomes.
331-354
Electronic Edition (link) BibTeX
- Michael Wagner, Rafal Adamczak, Aleksey A. Porollo, Jaroslaw Meller:
Linear Regression Models for Solvent Accessibility Prediction in Proteins.
355-369
Electronic Edition (link) BibTeX
- Lang Li, Huidong Shi, Constantin Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew:
Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System.
370-390
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Volume 12,
Number 4,
May 2005
Volume 12,
Number 5,
June 2005
- Ian M. Dew, Brian Walenz, Granger G. Sutton:
A Tool for Analyzing Mate Pairs in Assemblies (TAMPA).
497-513
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- Roded Sharan, Jens Gramm, Zohar Yakhini, Amir Ben-Dor:
Multiplexing Schemes for Generic SNP Genotyping Assays.
514-533
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- Daniel P. Berrar, Brian Sturgeon, Ian Bradbury, C. Stephen Downes, Werner Dubitzky:
Survival Trees for Analyzing Clinical Outcome in Lung Adenocarcinomas Based on Gene Expression Profiles: Identification of Neogenin and Diacylglycerol Kinase Expression as Critical Factors.
534-544
Electronic Edition (link) BibTeX
- Manuel Dehnert, Rainer Plaumann, Werner E. Helm, Marc-Th. Hütt:
Genome Phylogeny Based on Short-Range Correlations in DNA Sequences.
545-553
Electronic Edition (link) BibTeX
- Martijn J. Schuemie, Jan A. Kors, Barend Mons:
Word Sense Disambiguation in the Biomedical Domain: An Overview.
554-565
Electronic Edition (link) BibTeX
Volume 12,
Number 6,
July 2005
- Dan Gusfield:
Preface: Special RECOMB 2004 Issue.
567-568
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- Chris Bailey-Kellogg, Sheetal Chainraj, Gopal Pandurangan:
A Random Graph Approach to NMR Sequential Assignment.
569-583
Electronic Edition (link) BibTeX
- Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer:
Learning Multiple Evolutionary Pathways from Cross-Sectional Data.
584-598
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- Sourav Chatterji, Lior Pachter:
Large Multiple Organism Gene Finding by Collapsed Gibbs Sampling.
599-608
Electronic Edition (link) BibTeX
- Michael A. Erdmann:
Protein Similarity from Knot Theory: Geometric Convolution and Line Weavings.
609-637
Electronic Edition (link) BibTeX
- Xin He, Michael H. Goldwasser:
Identifying Conserved Gene Clusters in the Presence of Homology Families.
638-656
Electronic Edition (link) BibTeX
- Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan Prins, Alexander Tropsha:
Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs.
657-671
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- Henry C. M. Leung, Francis Y. L. Chin, Siu-Ming Yiu, Ronald Rosenfeld, Wai Wan Tsang:
Finding Motifs with Insufficient Number of Strong Binding Sites.
686-701
Electronic Edition (link) BibTeX
- Haifeng Li, Tao Jiang:
A Class of Edit Kernels for SVMs to Predict Translation Initiation Sites in Eukaryotic mRNAs.
702-718
Electronic Edition (link) BibTeX
- Jing Li, Tao Jiang:
Computing the Minimum Recombinant Haplotype Configuration from Incomplete Genotype Data on a Pedigree by Integer Linear Programming.
719-739
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- Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald:
A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme.
740-761
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- Ross A. Lippert, Xiaoyue Zhao, Liliana Florea, Clark Mobarry, Sorin Istrail:
Finding Anchors for Genomic Sequence Comparison.
762-776
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- Matthew Menke, Jonathan King, Bonnie Berger, Lenore Cowen:
Wrap-and-Pack: A New Paradigm for Beta Structural Motif Recognition with Application to Recognizing Beta Trefoils.
777-795
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- Luay Nakhleh, Tandy Warnow, C. Randal Linder, Katherine St. John:
Reconstructing Reticulate Evolution in SpeciesTheory and Practice.
796-811
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- David Sankoff, Phil Trinh:
Chromosomal Breakpoint Reuse in Genome Sequence Rearrangement.
812-821
Electronic Edition (link) BibTeX
- Eran Segal, Roded Sharan:
A Discriminative Model for Identifying Spatial cis-Regulatory Modules.
822-834
Electronic Edition (link) BibTeX
- Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp:
Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
835-846
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- Yanni Sun, Jeremy Buhler:
Designing Multiple Simultaneous Seeds for DNA Similarity Search.
847-861
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- Xinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, Guang Song, Nancy M. Amato:
Using Motion Planning to Study RNA Folding Kinetics.
862-881
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- Zhijin Wu, Rafael A. Irizarry:
Stochastic Models Inspired by Hybridization Theory for Short Oligonucleotide Arrays.
882-893
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- Xiaoyue Zhao, Haiyan Huang, Terence P. Speed:
Finding Short DNA Motifs Using Permuted Markov Models.
894-906
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Copyright © Tue Nov 18 20:41:19 2008
by Michael Ley (ley@uni-trier.de)
