Journal of Computational Biology, Volume 3

Volume 3, Number 1, Spring 1996

Pankaj Agarwal, David J. States: A Bayesian Evolutionary Distance for Parametrically Aligned Sequences. 1-18 BibTeX
Michael D. Hendy, David Penny: Complete Families of Linear Invariants for Some Stochastic Models of Sequence Evolution, with and without Molecular Clock Assumption. 19-32 BibTeX
E. W. Meyers: Approximate Matching of Network Expressions with Spacers. 33-52 BibTeX
William E. Hart, Sorin Istrail: Fast Protein Folding in the Hydrophobic-Hydrophillic Model within Three-Eights of Optimal. 53-96 BibTeX
Y. Takahashi: A Mathematical Solution to a Network Designing Problem. 97-142 BibTeX
R. R. Joshi, K. Krishnanand: Probabilistic Learning in Immune Network: Weighted Tree Matching Model. 143-162 BibTeX
Soren Kamaric Riis, Anders Krogh: Improving Predicition of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignments. 163-184 BibTeX
S. Tsang, Milton H. Saier Jr.: A Simple Flexible Program for the Computational Analysis of Amyl Acyl Residue Distribution in Proteins: Application to the Distribution of Aromatic versus Aliphatic Hydrophobic Amino Acids in Transmembrane alpha-Helical Spanners of Integral Membrane Transport Proteins. 185-190 BibTeX
Peter D. Karp, Suzanne M. Paley: Integrated Access to Metabolic and Genomic Data. 191- BibTeX

Raj K. Singh, Alexander Tropsha, Iosif I. Vaisman: Delaunay Tessellation of Proteins: Four Body Nearest-Neighbor Propensities of Amino Acid Residues. 213-222 BibTeX
Mikhail S. Gelfand, L. I. Podolsky, Tatiana V. Astakhova, Mikhail A. Roytberg: Recognition of Genes in Human DNA Sequences. 223-234 BibTeX
B. Schierwater, D. Metzler, K. Kruger, B. Streit: The Effects of Nested Primer Bindingg Sites on the Reproducibility of PCR: Mathematical Modeling and Simulation Studies. 235-252 BibTeX
Martijn A. Huynen, Alan S. Perelson, W. A. Vieira, Peter F. Stadler: Base Pairing Probabilities in a Complete HIV-1 RNA. 253-274 BibTeX
David Bryant: Hunting for Trees in Binary Character Sets: Efficient Algorithms for Extraction, Enumeration and Optimization. 275-288 BibTeX
Ina Koch, Thomas Lengauer, Egon Wanke: An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures. 289-306 BibTeX
C. Kelley, G. A. Curchill: Biases in Amino Acid Replacement Matrices and Alignment Scores Due to Rate Heterogeniety. 307-318 BibTeX
Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd: DNA Workbench: A Database Package to Manage Regional Physical Mapping. 319-330 BibTeX

Ying Xu, Richard J. Mural, Edward C. Uberbacher: An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. 333-344 BibTeX
M.-Y. Leung, G. M. Marsh, Terence P. Speed: Over- and Underrepresentation of Short DNA Words in Herpesvirus Genomes. 345-360 BibTeX
Hiroshi Mamitsuka: A Learning Method of Hidden Markov Models for Sequence Discrimination. 361-374 BibTeX
Thomas D. Wu: A Segment-Based Dynamic Programming Algorithm for Predicting Gene Structure. 375-394 BibTeX
Emanuel Knill, Alexander Schliep, David C. Torney: Interpretation of Pooling Experiments Using the Markov Chain Monte Carlo Method. 395-406 BibTeX
H. Salamon, Jorma Tarhio, K. Rønningen, G. Thomson: On Distinguishing Unique Combinations in Biological Sequences. 407-424 BibTeX
Richard Arratia, D. Martin, Gesine Reinert, Michael S. Waterman: Poisson Process Approximation for Sequence Repeats and Sequencing by Hybridization. 425 BibTeX
R. J. Robbins: Bioinformatics: Essential Infrastructure for Global Biology. 465- BibTeX

R. C. Griffiths, P. Marjoram: Ancestral Inference from Samples of DNA Sequences with Recombination. 479-502 BibTeX
Suchendra M. Bhandarkar, Sridhar Chirravuri, Jonathan Arnold: Parallel Computing of Physical Maps--A Comparative Study in SIMD and MIMD Parallelism. 503-528 BibTeX
R. R. Joshi: A Self-Organizing Cognitive Network of Antibody Repertoire Development. 529-546 BibTeX
Cathy H. Wu, S. Zhao, H.-L. Chen: A Protein Class Database Organized with ProSite Protein Groups and PIR Superfamilies. 547-562 BibTeX
Gene Myers, Sanford Selznick, Zheng Zhang, Webb Miller: Progressive Multiple Alignment with Constraints. 563-572 BibTeX
M. Teitelman, Frank H. Eeckman: Principal Component Analysis and Large-Scale Correlations in Non-Coding Sequences of Human DNA. 573- BibTeX