Journal of Integrative Bioinformatics, Volume 3
Volume 3, Number 1, 2006
Heike Pospisil: Identification of embryo specific human isoforms using a database of predicted alternative splice forms.
Björn H. Junker, Dirk Koschützki, Falk Schreiber: Kinetic Modelling with the Systems Biology Modelling Environment SyBME.
Kristian Rother, Mathias Dunkel, Elke Michalsky, Silke Trißl, Andrean Goede, Ulf Leser, Robert Preissner: A structural keystone for drug design.
D. Ashok Reddy, B. V. L. S. Prasad, Chanchal K. Mitra: Functional classification of transcription factor binding sites: information content as a metric.
Paolo Romano, Guglielmo Bertolini, Flavio De Paoli, M. Fattore, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Ivan Porro, Silvia Scaglione, Luciano Milanesi: Network integration of data and analysis of oncology interest.

Volume 3, Number 2, 2006
Jan Baumbach, Karina Brinkrolf, Tobias Wittkop, Andreas Tauch, Sven Rahmann: CoryneRegNet 2: An Integrative Bioinformatics Approach for Reconstruction and Comparison of Transcriptional Regulatory Networks in Prokaryotes.
Sabah Khalid, Karl Fraser, Mohsin Khan, Ping Wang, Xiaohui Liu, Suling Li: Analysing Microarray Data using the Multi-functional Immune Ontologiser.
Colin S. Gillespie, Darren J. Wilkinson, Daryl P. Shanley, Carole J. Proctor, Richard J. Boys, Thomas B. L. Kirkwood: BASIS: an internet resource for network modelling.
Wolfgang Straßer, Doris Siegl, Kamil Önder, Johann W. Bauer: InSilico Proteomics System: Integration and Application of Protein and Protein-Protein Interaction Data using Microsoft .NET.
Matthias Steinfath, Dirk Repsilber, Manuela Hische, Nicolas Schauer, Alisdair R. Fernie, Joachim Selbig: Metabolite profiles as a reflection of physiological status -- a methodological validation.
Yvonne E. Pittelkow, Susan R. Wilson: Modeling Microarray Data: Interpreting and communicating the biological results.
Enrico Capobianco: Statistical Embedding in Complex Biosystems .
Selpi, Christopher H. Bryant, Graham J. L. Kemp, Marija Cvijovic: A First Step towards Learning which uORFs Regulate Gene Expression.
Michael P. H. Stumpf, Thomas Thorne: Multi-model inference of network properties from incomplete data.
Laura Elo, Riitta Lahesmaa, Tero Aittokallio: Inference of Gene Coexpression Networks by Integrative Analysis across Microarray Experiments.
Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof: BN++ - A Biological Information System.
Emilie Guérin, Gwenaëlle Marquet, Julie Chabalier, Marie-Bérengère Troadec, Christiane Guguen-Guillouzo, Olivier Loréal, Anita Burgun, Fouzia Moussouni: Combining biomedical knowledge and transcriptomic data to extract new knowledge on genes.
Stuart L. Moodie, Anatoly A. Sorokin, Igor Goryanin, Peter Ghazal: A Graphical Notation to describe the Logical Interactions of Biological Pathways.
Ricardo Martínez, Nicolas Pasquier, Claude Pasquier, Martine Collard, Lucero Lopez-Perez: Co-expressed gene group analysis (CGGA): An automatic tool for the interpretation of microarray experiments.
Vilda Purutcuoglu, Ernst Wit: Exact and Approximate Stochastic Simulations of the MAPK Pathway and Comparisons of Simulations Results.
T. Charles Hodgman, Y. Ugartechea-Chirino, G. Tansley, I. Dryden: The implications for Bioinformatics of integration across physical scales.
Daniele Apiletti, Giulia Bruno, Elisa Ficarra, Elena Baralis: Data Cleaning and Semantic Improvement in Biological Databases.
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje: An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions.
Mikael Huss, Karin Nordström: Prediction of transcription factor binding to DNA using rule induction methods .
Andreas Kaps, Konstantin Dyshlevoi, Klaus Heumann, Ralf Jost, Ioannis Kontodinas, Martin Wolff, Jean Hani: The BioRS(TM) Integration and Retrieval System: An open system for distributed data integration.
B. Prins, Ralf Hofestädt: MILAN - A medical information-system linking agents to metabolic networks.



