Nucleic Acids Research, Volume 28

Volume 28, Number 1, January 2000

• Andreas D. Baxevanis:
  The Molecular Biology Database Collection: an online compilation of relevant database resources. 1-7
  
• Claude Discala, Xavier Benigni, Emmanuel Barillot, Guy Vaysseix:
  DBcat: a catalog of 500 biological databases. 8-9
  
• David L. Wheeler, Colombe Chappey, Alex E. Lash, Detlef D. Leipe, Thomas L. Madden, Gregory D. Schuler, Tatiana A. Tatusova, Barbara A. Rapp:
  Database resources of the National Center for Biotechnology Information. 10-14
  
• Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Barbara A. Rapp, David L. Wheeler:
  GenBank. 15-18
  
• Wendy Baker, Alexandra van den Broek, Evelyn Camon, Pascal Hingamp, Peter Sterk, Guenter Stoesser, Mary Ann Tuli:
  The EMBL Nucleotide Sequence Database. 19-23
  
• Yoshio Tateno, Satoru Miyazaki, Motonori Ota, Hideaki Sugawara, Takashi Gojobori:
  DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams. 24-26
  
• Minoru Kanehisa, Susumu Goto:
  KEGG: Kyoto Encyclopedia of Genes and Genomes. 27-30
  
• Carol Harger, Guanghong Chen, Andrew D. Farmer, Wen Huang, Jeff T. Inman, Donald Kiphart, Faye D. Schilkey, M. P. Skupski, Jennifer W. Weller:
  The Genome Sequence DataBase. 31-32
  
• Roman L. Tatusov, Michael Y. Galperin, Darren A. Natale, Eugene V. Koonin:
  The COG database: a tool for genome-scale analysis of protein functions and evolution. 33-36
  
• Hans-Werner Mewes, Dmitrij Frishman, Christian Gruber, Birgitta Geier, Dirk Haase, Andreas Kaps, Kai Lemcke, Gertrud Mannhaupt, Friedhelm Pfeiffer, Christine M. Schüller, S. Stocker, B. Weil:
  MIPS: a database for genomes and protein sequences. 37-40
  
• Winona C. Barker, John S. Garavelli, Hongzhan Huang, Peter B. McGarvey, Bruce C. Orcutt, Geetha Y. Srinivasarao, Chunlin Xiao, Lai-Su L. Yeh, Robert S. Ledley, Joseph F. Janda, Friedhelm Pfeiffer, Hans-Werner Mewes, Akira Tsugita, Cathy H. Wu:
  The Protein Information Resource (PIR). 41-44
  
• Amos Bairoch, Rolf Apweiler:
  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. 45-48
  
• Golan Yona, Nathan Linial, Michal Linial:
  ProtoMap: automatic classification of protein sequences and hierarchy of protein families. 49-55
  
• Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Suzanne M. Paley, Alida Pellegrini-Toole:
  The EcoCyc and MetaCyc databases. 56-59
  
• Kenneth E. Rudd:
  EcoGene: a genome sequence database for Escherichia coli K-12. 60-64
  
• Heladia Salgado, Alberto Santos-Zavaleta, Socorro Gama-Castro, Dulce Millán-Zárate, Frederick R. Blattner, Julio Collado-Vides:
  RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12. 65-67
  
• Guy Perrière, Philippe Bessières, Bernard Labedan:
  EMGLib: the Enhanced Microbial Genomes Library (update 2000). 68-71
  
• Yasukazu Nakamura, Takakazu Kaneko, Satoshi Tabata:
  CyanoBase, the genome database for Synechocystis sp. strain PCC6803: status for the year 2000. 72
  
• Maria C. Costanzo, Jennifer D. Hogan, Michael E. Cusick, Brian P. Davis, Ann M. Fancher, Peter E. Hodges, Pinar Kondu, Carey Lengieza, Jodi E. Lew-Smith, Carol Lingner, Kevin Roberg-Perez, Michael Tillberg, Joan E. Brooks, James I. Garrels:
  The Yeast Proteome Database (YPD) and Caenorhabditis elegans Proteome Database (WormPD): comprehensive resources for the organization and comparison of model organism protein information. 73-76
  
• Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Andrew Kasarskis, Charles R. Scafe, Gavin Sherlock, Gail Binkley, Heng Jin, Miroslava Kaloper, Sidney D. Orr, Mark Schroeder, Shuai Weng, Yan Zhu, David Botstein, J. Michael Cherry:
  Integrating functional genomic information into the Saccharomyces Genome Database. 77-80
  
• Anuj Kumar, Kei-Hoi Cheung, Petra Ross-MacDonald, Paulo S. R. Coelho, Perry L. Miller, Michael Snyder:
  TRIPLES: a database of gene function in Saccharomyces cerevisiae. 81-84
  
• Pascal J. Lopez, Bertrand Séraphin:
  YIDB: the Yeast Intron DataBase. 85-86
  
• Mark E. Waugh, Peter Hraber, Jennifer W. Weller, Yihe Wu, Guanghong Chen, Jeff T. Inman, Donald Kiphart, Bruno W. S. Sobral:
  The Phytophthora Genome Initiative Database: informatics and analysis for distributed pathogenomic research. 87-90
  
• W. James Kent, Alan M. Zahler:
  The Intronerator: exploring introns and alternative splicing in Caenorhabditis elegans. 91-93
  
• Xiaowu Gai, Shailesh Lal, Liqun Xing, Volker Brendel, Virginia Walbot:
  Gene discovery using the maize genome database ZmDB. 94-96
  
• Katsumi Sakata, Baltazar A. Antonio, Yoshiyuki Mukai, Hideki Nagasaki, Yasumichi Sakai, Kazuyoshi Makino, Takuji Sasaki:
  INE: a rice genome database with an integrated map view. 97-101
  
• Curtis J. Palm, Nancy A. Federspiel, Ronald W. Davis:
  DAtA: Database of Arabidopsis thaliana Annotation. 102-103
  
• Jo L. Dicks, Mary Anderson, Linda Cardle, Sam Cartinhour, Matthew Couchman, Guy Davenport, Jeremy Dickson, Mike Gale, David Marshall, Sean May, Hamish McWilliam, Andrew O'Malia, Helen Ougham, Martin Trick, Sean Walsh, Robbie Waugh:
  UK CropNet: a collection of databases and bioinformatics resources for crop plant genomics. 104-107
  
• Judith A. Blake, Janan T. Eppig, Joel E. Richardson, Muriel T. Davisson:
  The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse. 108-111
  
• Carol J. Bult, Debra M. Krupke, John P. Sundberg, Janan T. Eppig:
  Mouse Tumor Biology Database (MTB): enhancements and current status. 112-114
  
• Martin Ringwald, Janan T. Eppig, James A. Kadin, Joel E. Richardson:
  GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements. 115-119
  
• R. Ploger, J. Zhang, D. Bassett, R. Reeves, P. Hieter, Mark Boguski, F. Spencer:
  XREFdb: cross-referencing the genetics and genes of mammals and model organisms. 120-122
  
• Ross A. Overbeek, Niels Larsen, Gordon D. Pusch, Mark D'Souza, Evgeni Selkov Jr., Nikos Kyrpides, Michael Fonstein, Natalia Maltsev, Evgeni Selkov:
  WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction. 123-125
  
• Donna R. Maglott, Kenneth S. Katz, Hugues Sicotte, Kim D. Pruitt:
  NCBI's LocusLink and RefSeq. 126-128
  
• Shaying Zhao:
  Human BAC Ends. 129-132
  
• Takeshi Kawashima, Shuichi Kawashima, Minoru Kanehisa, Hiroki Nishida, Kazuhiro W. Makabe:
  MAGEST: MAboya Gene Expression patterns and Sequence Tags. 133-135
  
• Teruyoshi Hishiki, Shoko Kawamoto, Shinichi Morishita, Kousaku Okubo:
  BodyMap: a human and mouse gene expression database. 136-138
  
• Nicolas Pollet, Heiko A. Schmidt, Volker Gawantka, Martin Vingron, Christof Niehrs:
  Axeldb: a Xenopus laevis database focusing on gene expression. 139-140
  
• John Quackenbush, Feng Liang, Ingeborg Holt, Geo Pertea, Jonathan Upton:
  The TIGR Gene Indices: reconstruction and representation of expressed gene sequences. 141-145
  
• Patricia Rodriguez-Tomé, Philip Lijnzaad:
  RHdb: the Radiation Hybrid database. 146-147
  
• Marcella Attimonelli, N. Altamura, R. Benne, A. Brennicke, J. M. Cooper, Domenica D'Elia, A. de Montalvo, B. de Pinto, Mariateresa De Robertis, P. Golik, V. Knoop, Cecilia Lanave, Jaga Lazowska, Flavio Licciulli, B. S. Malladi, F. Memeo, M. Monnerot, R. Pasimeni, Sandrine Pilbout, A. H. V. Schapira, P. Sloof, Cecilia Saccone:
  MitBASE : a comprehensive and integrated mitochondrial DNA database. The present status. 148-152
  
• Cecilia Lanave, Sabino Liuni, Flavio Licciulli, Marcella Attimonelli:
  Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences. 153-154
  
• Curt Scharfe, Paolo Zaccaria, K. Hörtnagel, M. Jaksch, Thomas Klopstock, M. Dembowski, R. Lill, Holger Prokisch, K. D. Gerbitz, W. Neupert, Hans-Werner Mewes, Thomas Meitinger:
  MITOP, the mitochondrial proteome database: 2000 update. 155-158
  
• Vito Volpetti, Raffaele Gallerani, Caterina De Benedetto, Sabino Liuni, Flavio Licciulli, Luigi R. Ceci:
  PLMItRNA, a database for tRNAs and tRNA genes in plant mitochondria: enlargement and updating. 159-162
  
• Graziano Pesole, Carmela Gissi, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marcella Attimonelli, Cecilia Saccone:
  MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins. 163-165
  
• Maciej Szymanski, Miroslawa Z. Barciszewska, Jan Barciszewski, Volker A. Erdmann:
  5S ribosomal RNA database Y2K. 166-167
  
• Kelly P. Williams:
  The tmRNA Website. 168-1
  
• Christian Zwieb, Jacek Wower:
  tmRDB (tmRNA database). 169-170
  
• Christian Zwieb, Tore Samuelsson:
  SRPDB (Signal Recognition Particle Database). 171-172
  
• Bonnie L. Maidak, James R. Cole, Timothy G. Lilburn, Charles T. Parker Jr., Paul Saxman, Jason M. Stredwick, George M. Garrity, Bing Li, Gary J. Olsen, Sakti Pramanik, Thomas M. Schmidt, James M. Tiedje:
  The RDP (Ribosomal Database Project) continues. 173-174
  
• Yves Van de Peer, Peter De Rijk, Jan Wuyts, Tina Winkelmans, Rupert De Wachter:
  The European Small Subunit Ribosomal RNA database. 175-176
  
• Peter De Rijk, Jan Wuyts, Yves Van de Peer, Tina Winkelmans, Rupert De Wachter:
  The European Large Subunit Ribosomal RNA database. 177-178
  
• Martin Pelchat, Patrick Deschênes, Jean-Pierre Perreault:
  The database of the smallest known auto-replicable RNA species: viroids and viroid-like RNAs. 179-180
  
• Nicholas J. Schisler, Jeffrey D. Palmer:
  The IDB and IEDB: intron sequence and evolution databases. 181-184
  
• Serge Saxonov, Iraj Daizadeh, Alexei Fedorov, Walter Gilbert:
  EID: the Exon?Intron Database?an exhaustive database of protein-coding intron-containing genes. 185-190
  
• Meena K. Sakharkar, Manyuan Long, Tin Wee Tan, Sandro J. de Souza:
  ExInt: an Exon/Intron database. 191-192
  
• Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone:
  UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. 193-196
  
• Volker A. Erdmann, Maciej Szymanski, Abraham Hochberg, Nathan de Groot, Jan Barciszewski:
  Non-coding, mRNA-like RNAs database Y2K. 197-200
  
• F. H. D. van Batenburg, Alexander P. Gultyaev, C. W. A. Pleij, J. Ng, J. Oliehoek:
  PseudoBase: a database with RNA pseudoknots. 201-204
  
• Julia V. Ponomarenko, Galina Orlova, Mikhail P. Ponomarenko, Sergey V. Lavryushev, Anatoly S. Frolov, Svetlana V. Zybova, Nikolay A. Kolchanov:
  SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation. 205-208
  
• John S. Garavelli:
  The RESID Database of protein structure modifications: 2000 update. 209-211
  
• Peter S. Nelson, Nigel Clegg, Burak Eroglu, Victoria Hawkins, Roger Eugene Bumgarner, Todd Smith, Leroy E. Hood:
  The Prostate Expression Database (PEDB): status and enhancements in 2000. 212-213
  
• George Johnson, Tai Te Wu:
  Kabat Database and its applications: 30 years after the first variability plot. 214-218
  
• Manuel Ruiz, Véronique Giudicelli, Chantal Ginestoux, Peter Stoehr, James Robinson, Julia G. Bodmer, Steven G. E. Marsh, Ronald Bontrop, Marc Lemaitre, Gérard Lefranc, Denys Chaume, Marie-Paule Lefranc:
  IMGT, the international ImMunoGeneTics database. 219-221
  
• Christian Schönbach, Judice L. Y. Koh, Xin Sheng, Limsoon Wong, Vladimir Brusic:
  FIMM, a database of functional molecular immunology. 222-224
  
• Terri K. Attwood, Michael D. R. Croning, Darren R. Flower, A. P. Lewis, J. E. Mabey, Philip Scordis, J. N. Selley, W. Wright:
  PRINTS-S: the database formerly known as PRINTS. 225-227
  
• Jorja G. Henikoff, Elizabeth A. Greene, Shmuel Pietrokovski, Steven Henikoff:
  Increased coverage of protein families with the Blocks Database servers. 228-230
  
• Jörg Schultz, Richard R. Copley, Tobias Doerks, Chris P. Ponting, Peer Bork:
  SMART: a web-based tool for the study of genetically mobile domains. 231-234
  
• Helen M. Berman, John D. Westbrook, Zukang Feng, Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne:
  The Protein Data Bank. 235-242
  
• Yanli Wang, Kenneth J. Addess, Lewis Y. Geer, Thomas Madej, Aron Marchler-Bauer, Diane Zimmerman, Stephen H. Bryant:
  MMDB: 3D structure data in Entrez. 243-245
  
• Jan Reichert, Andreas Jabs, Peter Slickers, Jürgen Sühnel:
  The IMB Jena Image Library of Biological Macromolecules. 246-249
  
• Roberto Sánchez, Ursula Pieper, Nebojsa Mirkovic, Paul I. W. de Bakker, Edward Wittenstein, Andrej Sali:
  MODBASE, a database of annotated comparative protein structure models. 250-253
  
• Steven E. Brenner, Patrice Koehl, Michael Levitt:
  The ASTRAL compendium for protein structure and sequence analysis. 254-256
  
• Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia:
  SCOP: a Structural Classification of Proteins database. 257-259
  
• János Murvai, Kristian Vlahovicek, Endre Barta, Bruno Cataletto, Sándor Pongor:
  The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments. 260-262
  
• Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer:
  The Pfam Protein Families Database. 263-266
  
• Florence Corpet, Florence Servant, Jérôme Gouzy, Daniel Kahn:
  ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons. 267-269
  
• Antje Krause, Jens Stoye, Martin Vingron:
  The SYSTERS protein sequence cluster set. 270-272
  
• Hongzhan Huang, Chunlin Xiao, Cathy H. Wu:
  ProClass protein family database. 273-276
  
• Frances M. G. Pearl, David Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo:
  Assigning genomic sequences to CATH. 277-282
  
• M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Ponraj Prabakaran, Akinori Sarai:
  ProTherm, version 2.0: thermodynamic database for proteins and mutants. 283-285
  
• Christine Hoogland, Jean-Charles Sanchez, Luisa Tonella, Pierre-Alain Binz, Amos Bairoch, Denis F. Hochstrasser, Ron D. Appel:
  The 1999 SWISS-2DPAGE database update. 286-288
  
• Ioannis Xenarios, Danny W. Rice, Lukasz Salwínski, Marisa K. Baron, Edward M. Marcotte, David Eisenberg:
  DIP: the Database of Interacting Proteins. 289-291
  
• Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura:
  Codon usage tabulated from international DNA sequence databases: status for the year 2000. 292
  
• Grant H. Jacobs, Peter A. Stockwell, Mark J. Schreiber, Warren Tate, Chris M. Brown:
  Transterm: a database of messenger RNA components and signals. 293-295
  
• I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Manfred Zorn, Inna Dubchak:
  ASDB: database of alternatively spliced genes. 296-297
  
• Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton:
  Transcription Regulatory Regions Database (TRRD): its status in 2000. 298-301
  
• Rouaïda Cavin Périer, Viviane Praz, Thomas Junier, Claude Bonnard, Philipp Bucher:
  The Eukaryotic Promoter Database (EPD). 302-303
  
• Amos Bairoch:
  The ENZYME database in 2000. 304-305
  
• Richard J. Roberts, Dana Macelis:
  REBASE ? restriction enzymes and methylases. 306-307
  
• David Ghosh:
  Object-oriented Transcription Factors Database (ooTFD). 308-310
  
• Olga V. Kel-Margoulis, Aida G. Romashchenko, Nikolay A. Kolchanov, Edgar Wingender, Alexander E. Kel:
  COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation. 311-315
  
• Edgar Wingender, Xin Chen, R. Hehl, Holger Karas, Ines Liebich, V. Matys, T. Meinhardt, M. Prüß, Ingmar Reuter, Frank Schacherer:
  TRANSFAC: an integrated system for gene expression regulation. 316-319
  
• Steven A. Sullivan, L. Aravind, Izabela Makalowska, Andreas D. Baxevanis, David Landsman:
  The Histone Database: a comprehensive WWW resource for histones and histone fold-containing proteins. 320-322
  
• Neil D. Rawlings, Alan J. Barrett:
  MEROPS: the peptidase database. 323-325
  
• Maciej Szymanski, Jan Barciszewski:
  Aminoacyl-tRNA synthetases database Y2K. 326-328
  
• Sharmila Banerjee-Basu, Joseph F. Ryan, Andreas D. Baxevanis:
  The Homeodomain Resource: a prototype database for a large protein family. 329-330
  
• Reiko Kikuno, Takahiro Nagase, Mikita Suyama, Mina Waki, Makoto Hirosawa, Osamu Ohara:
  HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project. 331-332
  
• Eckhard Jankowsky, Anja Jankowsky:
  The DExH/D protein family database. 333-334
  
• Mark D'Souza, Margaret F. Romine, Natalia Maltsev:
  SENTRA, a database of signal transduction proteins. 335-336
  
• Alexander V. Spirov, Timothy Bowler, John Reinitz:
  HOX Pro: a specialized database for clusters and networks of homeobox genes. 337-340
  
• Emmanouil Skoufos, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
  Olfactory Receptor Database: a sensory chemoreceptor resource. 341-343
  
• Francine B. Perler:
  InBase, the Intein Database. 344-345
  
• Robert W. Shafer, Duane R. Jung, Bradley J. Betts, Yinong Xi, Matthew J. Gonzales:
  Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database. 346-348
  
• Jean-Loup Huret, Sylvaine Le Minor, Frank Dorkeld, Philippe Dessen, Alain Bernheim:
  Atlas of Genetics and Cytogenetics in Oncology and Haematology, an Interactive Database. 349-351
  
• Elizabeth M. Smigielski, Karl Sirotkin, Minghong Ward, Stephen T. Sherry:
  dbSNP: a database of single nucleotide polymorphisms. 352-355
  
• Anthony J. Brookes, Heikki Lehväslaiho, Marianne Siegfried, Jana G. Boehm, Yan P. Yuan, Chandra M. Sarkar, Peer Bork, J. Flavio R. Ortigao:
  HGBASE: a database of SNPs and other variations in and around human genes. 356-360
  
• Kei-Hoi Cheung, Michael V. Osier, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd:
  ALFRED: an allele frequency database for diverse populations and DNA polymorphisms. 361-363
  
• Shinsei Minoshima, Susumu Mitsuyama, Saho Ohno, Takashi Kawamura, Nobuyoshi Shimizu:
  Keio Mutation Database (KMDB) for human disease gene mutations. 364-368
  
• Kaj A. E. Stenberg, Pentti Riikonen, Mauno Vihinen:
  KinMutBase, a database of human disease-causing protein kinase mutations. 369-371
  
• Domenico Catalano, Flavio Licciulli, Domenica D'Elia, Marcella Attimonelli:
  Update of KEYnet: a gene and protein names database for biosequences functional organisation. 372-373
  
• Shuichi Kawashima, Minoru Kanehisa:
  AAindex: Amino Acid index database. 374
  
• Uma Nagaswamy, Neil Voss, Zhengdong Zhang, George E. Fox:
  Database of non-canonical base pairs found in known RNA structures. 375-376
  
• Lynda B. M. Ellis, C. Douglas Hershberger, Lawrence P. Wackett:
  The University of Minnesota Biocatalysis/Biodegradation Database: microorganisms, genomics and prediction. 377-379
  
• Susumu Goto, Takaaki Nishioka, Minoru Kanehisa:
  LIGAND: chemical database of enzyme reactions. 380-382
  

Volume 28, Number 13, July 2000

• Michaela Scherr, John J. Rossi, Georg Sczakiel, Volker Patzel:
  RNA accessibility prediction: a theoretical approach is consistent with experimental studies in cell extracts. 2455-2461
  
• Volker Patzel, Georg Sczakiel:
  In vitro selection supports the view of a kinetic control of antisense RNA-mediated inhibition of gene expression in mammalian cells. 2462-2466
  
• Marie-Christine Chaboissier, David Finnegan, Alain Bucheton:
  Retrotransposition of the I factor, a non-long terminal repeat retrotransposon of Drosophila, generates tandem repeats at the 3' end. 2467-2472
  
• Ayumi Yamada, Chikahide Masutani, Shigenori Iwai, Fumio Hanaoka:
  Complementation of defective translesion synthesis and UV light sensitivity in xeroderma pigmentosum variant cells by human and mouse DNA polymerase. 2473-2480
  
• Ceslovas Venclovas, Michael P. Thelen:
  Structure-based predictions of Rad1, Rad9, Hus1 and Rad17 participation in sliding clamp and clamp-loading complexes. 2481-2493
  
• Mireille Boyer, Nicolas Poujol, Emmanuel Margeat, Catherine A. Royer:
  Quantitative characterization of the interaction between purified human estrogen receptor and DNA using fluorescence anisotropy. 2494-2502
  
• Lucia Pellizzari, Angela D'Elia, Alessandra Rustighi, Guidalberto Manfioletti, Gianluca Tell, Giuseppe Damante:
  Expression and function of the homeodomain-containing protein Hex in thyroid cells. 2503-2511
  
• Joby M. Chesnick, Megan Goff, James Graham, Christopher Ocampo, B. Franz Lang, Elias Seif, Gertraud Burger:
  The mitochondrial genome of the stramenopile alga Chrysodidymus synuroideus. Complete sequence, gene content and genome organization. 2512-2518
  
• Catherine Elaine Koering, Genevieve Fourel, Emmanuelle Binet-Brasselet, Thierry Laroche, Franz Klein, Eric Gilson:
  Identification of high affinity Tbf1p-binding sites within the budding yeast genome. 2519-2526
  
• Maria C. Nagan, Penny Beuning, Karin Musier-Forsyth, Christopher J. Cramer:
  Importance of discriminator base stacking interactions: molecular dynamics analysis of A73 microhelixAla variants. 2527-2534
  
• Keith R. Fox, Sarah L. Allinson, Heidi Sahagun-Krause, Tom Brown:
  Recognition of GT mismatches by Vsr mismatch endonuclease. 2535-2540
  
• Rajesh Bagga, Susan Michalowski, Rohit Sabnis, Jack D. Griffith, Beverly M. Emerson:
  HMG I/Y regulates long-range enhancer-dependent transcription on DNA and chromatin by changes in DNA topology. 2541-2550
  
• Takehisa Nakahara, Qiu-Mei Zhang, Kazunari Hashiguchi, Shuji Yonei:
  Identification of proteins of Escherichia coli and Saccharomyces cerevisiae that specifically bind to C/C mismatches in DNA. 2551-2556
  
• Kohtaro Fujimoto, Satoru Kyo, Masahiro Takakura, Taro Kanaya, Yasuhide Kitagawa, Hideaki Itoh, Morinobu Takahashi, Masaki Inoue:
  Identification and characterization of negative regulatory elements of the human telomerase catalytic subunit (hTERT) gene promoter: possible role of MZF-2 in transcriptional repression of hTERT. 2557-2562
  
• Emma Southern, Mike Merrick:
  The role of Region II in the RNA polymerase factor N (54). 2563-2570
  
• Tomohiko Kubo, Satsuki Nishizawa, Akira Sugawara, Noriko Itchoda, Amy Estiati, Tetsuo Mikami:
  The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNACys(GCA). 2571-2576
  
• Sabrina Ceccotti, Carmela Ciotta, Gilberto Fronza, Eugenia Dogliotti, Margherita Bignami:
  Multiple mutations and frameshifts are the hallmark of defective hPMS2 in pZ189-transfected human tumor cells. 2577-2584
  
• Elke Feldmann, Viola Schmiemann, Wolfgang Goedecke, Susanne Reichenberger, Petra Pfeiffer:
  DNA double-strand break repair in cell-free extracts from Ku80-deficient cells: implications for Ku serving as an alignment factor in non-homologous DNA end joining. 2585-2596
  
• Maik Jörg Lehmann, Volker Patzel, Georg Sczakiel:
  Theoretical design of antisense genes with statistically increased efficacy. 2597-2604
  
• Qi-Xiang Li, Joan M. Robbins, Peter J. Welch, Flossie Wong-Staal, Jack R. Barber:
  A novel functional genomics approach identifies mTERT as a suppressor of fibroblast transformation. 2605-2612
  
• Daniel Barsky, Nicolas Foloppe, Sarah Ahmadia, David M. Wilson III, Alexander D. MacKerell Jr.:
  New insights into the structure of abasic DNA from molecular dynamics simulations. 2613-2626
  

• Martina Kovárová, Petr Dráber:
  New specificity and yield enhancer of polymerase chain reactions. 70
  

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