Parallel Computing, Volume 35

Volume 35, Number 1, January 2009

• Xiandong Meng, Vipin Chaudhary:
  Boosting data throughput for sequence database similarity searches on FPGAs using an adaptive buffering scheme. 1-11
  
• Ricardo C. Corrêa, Valmir C. Barbosa:
  Partially ordered distributed computations on asynchronous point-to-point networks. 12-28
  
• Lih-Yuan Deng, Huajiang Li, Jyh-Jen Horng Shiau:
  Scalable parallel multiple recursive generators of large order. 29-37
  
• Alfredo Buttari, Julien Langou, Jakub Kurzak, Jack Dongarra:
  A class of parallel tiled linear algebra algorithms for multicore architectures. 38-53
  

Volume 35, Number 2, February 2009

• Fabrício Alves Barbosa da Silva, Hermes Senger:
  Improving scalability of Bag-of-Tasks applications running on master-slave platforms. 57-71
  
• Yuh-Rau Wang:
  A novel O(1) time algorithm for 3D block-based medial axis transform by peeling corner shells. 72-82
  
• Anne Benoit, Mourad Hakem, Yves Robert:
  Contention awareness and fault-tolerant scheduling for precedence constrained tasks in heterogeneous systems. 83-108
  
• L. K. S. Daldorff, B. Eliasson:
  Parallelization of a Vlasov-Maxwell solver in four-dimensional phase space. 109-115
  

Volume 35, Number 3, March 2009

• Rupak Biswas, Leonid Oliker, Jeffrey S. Vetter:
  Revolutionary technologies for acceleration of emerging petascale applications. 117-118
  
• David A. Bader, Virat Agarwal, Seunghwa Kang:
  Computing discrete transforms on the Cell Broadband Engine. 119-137
  
• Jakub Kurzak, Wesley Alvaro, Jack Dongarra:
  Optimizing matrix multiplication for a short-vector SIMD architecture - CELL processor. 138-150
  
• Jeremy S. Meredith, Gonzalo Alvarez, Thomas A. Maier, Thomas C. Schulthess, Jeffrey S. Vetter:
  Accuracy and performance of graphics processors: A Quantum Monte Carlo application case study. 151-163
  
• David J. Hardy, John E. Stone, Klaus Schulten:
  Multilevel summation of electrostatic potentials using graphics processing units. 164-177
  
• Samuel Williams, Leonid Oliker, Richard W. Vuduc, John Shalf, Katherine A. Yelick, James Demmel:
  Optimization of sparse matrix-vector multiplication on emerging multicore platforms. 178-194
  

Volume 35, Number 4, April 2009

• Suresh Behara, Sanjay Mittal:
  Parallel finite element computation of incompressible flows. 195-212
  
• Arquimedes Canedo, Ben A. Abderazek, Masahiro Sowa:
  Efficient compilation for queue size constrained queue processors. 213-225
  
• Tien-Yien Li, Chih-Hsiung Tsai:
  HOM4PS-2.0para: Parallelization of HOM4PS-2.0 for solving polynomial systems. 226-238
  
• Sid Ahmed Ali Touati, Zsolt Mathe:
  Periodic register saturation in innermost loops. 239-254
  

Volume 35, Number 5, May 2009

• Won Woo Ro, Jean-Luc Gaudiot:
  A complexity-effective microprocessor design with decoupled dispatch queues and prefetching. 255-268
  
• Yaohang Li, Michael Mascagni, Andrey Gorin:
  A decentralized parallel implementation for parallel tempering algorithm. 269-283
  
• Leopold Grinberg, D. Pekurovsky, S. J. Sherwin, George E. Karniadakis:
  Parallel performance of the coarse space linear vertex solver and low energy basis preconditioner for spectral/hp elements. 284-304
  
• Antonio Robles-Gómez, Aurelio Bermúdez, Rafael Casado, Åshild Grønstad Solheim:
  A dynamic distributed mechanism for reconfiguring high-performance networks. 305-312
  

Volume 35, Number 6, June 2009

• Ching-Wen Chen, Chuan-Chi Weng, Chang-Jung Ku:
  An overlapping and pipelining data transmission MAC protocol with multiple channels in ad hoc networks. 313-330
  
• Taro Konda, Yoshimasa Nakamura:
  A new algorithm for singular value decomposition and its parallelization. 331-344
  
• Gerold Jäger, Clemens Wagner:
  Efficient parallelizations of Hermite and Smith normal form algorithms. 345-357
  
• Julian Borrill, Leonid Oliker, John Shalf, Hongzhang Shan, Andrew Uselton:
  HPC global file system performance analysis using a scientific-application derived benchmark. 358-373
  

Volume 35, Number 7, July 2009

• Markus Geimer, Felix Wolf, Brian J. N. Wylie, Bernd Mohr:
  A scalable tool architecture for diagnosing wait states in massively parallel applications. 375-388
  
• Jay Smith, Vladimir Shestak, Howard Jay Siegel, Suzy Price, Larry Teklits, Prasanna Sugavanam:
  Robust resource allocation in a cluster based imaging system. 389-400
  
• Yang Wang, Ming Zhu, Hua Li:
  A distributed Key Message algorithm to optimize the communication in clusters. 401-415
  
• Hatem Ltaief, Marc Garbey:
  A parallel Aitken-additive Schwarz waveform relaxation suitable for the grid. 416-428
  

Volume 35, Numbers 8-9, August - September 2009

• Cole Trapnell, Michael C. Schatz:
  Optimizing data intensive GPGPU computations for DNA sequence alignment. 429-440
  
• Tz-Liang Kueng, Cheng-Kuan Lin, Tyne Liang, Jimmy J. M. Tan, Lih-Hsing Hsu:
  Embedding paths of variable lengths into hypercubes with conditional link-faults. 441-454
  
• Arturo González-Escribano, Arjan J. C. van Gemund, Valentín Cardeñoso-Payo:
  Performance implications of synchronization structure in parallel programming. 455-474
  
• Ananta Tiwari, Vahid Tabatabaee, Jeffrey K. Hollingsworth:
  Tuning parallel applications in parallel. 475-492