Source Code for Biology and Medicine, Volume 3

Volume 3, 2008

• Mikael Lund, Martin Trulsson, Björn Persson:
  Faunus: An object oriented framework for molecular simulation.
  
• Roderic D. M. Page:
  LSID Tester, a tool for testing Life Science Identifier resolution services.
  
• Flávio C. Coelho, Oswaldo G. Cruz, Cláudia T. Codeço:
  Epigrass: a tool to study disease spread in complex networks.
  
• James A. Morris, Simon A. Gayther, Ian J. Jacobs, Christopher Jones:
  A Perl toolkit for LIMS development.
  
• Nicolas J. Parker, Andrew G. Parker:
  Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data.
  
• Faheem Mitha, Timothy A. Lucas, Feng Feng, Thomas B. Kepler, Cliburn Chan:
  The Multiscale Systems Immunology project: software for cell-based immunological simulation.
  
• Ravi Teja Bhupatiraju, William R. Hersh, Valerie Smothers, Michael Fordis, Peter S. Greene:
  The MERG Suite: Tools for discovering competencies and associated learning resources.
  
• Pirkko Muhonen, Ranga N. Parthasarathy, Anthony J. Janckila, Kalman G. Büki, H. Kalervo Väänänen:
  Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules.
  
• Isana Veksler-Lublinsky, Danny Barash, Chai Avisar, Einav Troim, L. Paul Chew, Klara Kedem:
  FASH: A web application for nucleotides sequence search.
  
• Jacob Frelinger, Thomas B. Kepler, Cliburn Chan:
  Flow: Statistics, visualization and informatics for flow cytometry.
  
• Will Stott, Andy Ryan, Ian J. Jacobs, Usha Menon, Conrad Bessant, Christopher Jones:
  OSPACS: Ultrasound image management system.
  
• Alexei A. Podtelezhnikov, David L. Wild:
  CRANKITE: A fast polypeptide backbone conformation sampler.
  
• Lior Shamir, Nikita Orlov, D. Mark Eckley, Tomasz J. Macura, Josiah Johnston, Ilya G. Goldberg:
  Wndchrm - an open source utility for biological image analysis.
  
• Joy Scaria, Aswathy Sreedharan, Yung-Fu Chang:
  Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis.
  
• Anyela Camargo, Francisco Azuaje, Haiying Wang, Huiru Zheng:
  Permutation - based statistical tests for multiple hypotheses.
  
• István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert:
  Boolean network simulations for life scientists.
  
• Zoran Bursac, C. Heath Gauss, David Keith Williams, David W. Hosmer:
  Purposeful selection of variables in logistic regression.