Scientific Programming, Volume 16

Volume 16, Number 1, 2008

• Ronald H. Perrott:
  Memorial. 1
  
• Mohammed Javeed Zaki, Naren Ramakrishnan, Srinivasan Parthasarathy:
  Biological data mining. 3
  
• Brian King, Chittibabu Guda:
  Semi-supervised learning for classification of protein sequence data. 5-29
  
• Ji Zhang, Qigang Gao, Hai H. Wang:
  Discover gene specific local co-regulations from time-course gene expression data. 31-47
  
• Debprakash Patnaik, P. S. Sastry, K. P. Unnikrishnan:
  Inferring neuronal network connectivity from spike data: A temporal data mining approach. 49-77
  
• Laurent Hascoët, Jean Utke, Uwe Naumann:
  Cheaper adjoints by reversing address computations. 81-92
  
• Michael Wester:
  Software Review. 93-96
  
• David H. Bailey:
  Book Review. 97-98
  

Volume 16, Numbers 2-3, 2008

• Barbara M. Chapman, Dieter Kranzlmüller:
  Foreword. 101-103
  
• Martin Schulz, Jim Galarowicz, Don Maghrak, William Hachfeld, David Montoya, Scott Cranford:
  Open | SpeedShop: An open source infrastructure for parallel performance analysis. 105-121
  
• Kevin A. Huck, Allen D. Malony, Sameer Shende, Alan Morris:
  Knowledge support and automation for performance analysis with PerfExplorer 2.0. 123-134
  
• Oscar Hernandez, Barbara M. Chapman, Haoqiang Jin:
  A performance tuning methodology with compiler support. 135-153
  
• Anthony Chan, William Gropp, Ewing L. Lusk:
  An efficient format for nearly constant-time access to arbitrary time intervals in large trace files. 155-165
  
• Brian J. N. Wylie, Markus Geimer, Felix Wolf:
  Performance measurement and analysis of large-scale parallel applications on leadership computing systems. 167-181
  
• Mark Baker, Richard Boakes:
  Slogger: A profiling and analysis system based on Semantic Web technologies. 183-204
  
• Bartosz Balis, Marian Bubak, Bartlomiej Labno:
  Monitoring of Grid scientific workflows. 205-216
  
• Tom Peachey, N. T. Diamond, David Abramson, Wibke Sudholt, A. Michailova, S. Amirriazi:
  Fractional factorial design for parameter sweep experiments using Nimrod/E. 217-230
  
• Alexandru Iosup, Todd Tannenbaum, Matthew Farrellee, Dick H. J. Epema, Miron Livny:
  Inter-operating grids through Delegated MatchMaking. 233-253
  

• Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew D. Johnson, Daniel Janies, Alexandros Stamatakis:
  Large-scale phylogenetic analysis on current HPC architectures. 255-270
  
• Stephen R. Ellis:
  Book Review. 271-274
  

Volume 16, Number 4, 2008

• Damian W. I. Rouson:
  Complexity in scalable computing. 275-276
  
• Ida M. B. Nielsen, Curtis L. Janssen:
  Multicore challenges and benefits for high performance scientific computing. 277-285
  
• Joseph P. Kenny, Curtis L. Janssen, Mark S. Gordon, Masha Sosonkina, Theresa L. Windus:
  A component approach to collaborative scientific software development: Tools and techniques utilized by the Quantum Chemistry Science Application Partnership. 287-296
  
• Helgi Adalsteinsson, Bert J. Debusschere, Kevin R. Long, Habib N. Najm:
  Components for atomistic-to-continuum multiscale modeling of flow in micro- and nanofluidic systems. 297-313
  
• Benjamin A. Allan, Boyana Norris, Wael R. Elwasif, Robert C. Armstrong:
  Managing scientific software complexity with Bocca and CCA. 315-327
  
• Damian W. I. Rouson:
  Towards analysis-driven scientific software architecture: The case for abstract data type calculus. 329-339
  
• Sandya S. Mannarswamy:
  Book Review. 341-342