Volume 2, Number 1, January 2005
- Junhyong Kim, Inge Jonassen:
Guest Editorial: WABI Special Section Part II.
1-2
- Julien Allali, Marie-France Sagot:
A New Distance for High Level RNA Secondary Structure Comparison.
3-14
- Denis Bertrand, Olivier Gascuel:
Topological Rearrangements and Local Search Method for Tandem Duplication Trees.
15-28
- Daniel G. Brown:
Optimizing Multiple Seeds for Protein Homology Search.
29-38
- Dan Gusfield:
Editorial-State of the Transaction.
39
- Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot:
Bases of Motifs for Generating Repeated Patterns with Wild Cards.
40-50
- Gregory Kucherov, Laurent Noé, Mikhail A. Roytberg:
Multiseed Lossless Filtration.
51-61
- Ying Liu, Shamkant B. Navathe, Jorge Civera, Venu Dasigi, Ashwin Ram, Brian J. Ciliax, Ray Dingledine:
Text Mining Biomedical Literature for Discovering Gene-to-Gene Relationships: A Comparative Study of Algorithms.
62-76
Volume 2, Number 2, April 2005
- Charles X. Ling, William Stafford Noble, Qiang Yang:
Guest Editors' Introduction to the Special Issue: Machine Learning for Bioinformatics - Part 1.
81-82
- Wai-Ho Au, Keith C. C. Chan, Andrew K. C. Wong, Yang Wang:
Attribute Clustering for Grouping, Selection, and Classification of Gene Expression Data.
83-101
- Pravesh Biyani, Xiaolin Wu, Abhijit Sinha:
Joint Classification and Pairing of Human Chromosomes.
102-109
- Cesare Furlanello, Maria Serafini, Stefano Merler, Giuseppe Jurman:
Semisupervised Learning for Molecular Profiling.
110-118
- Hiroshi Mamitsuka:
Essential Latent Knowledge for Protein-Protein Interactions: Analysis by an Unsupervised Learning Approach.
119-130
- Jagath C. Rajapakse, Loi Sy Ho:
Markov Encoding for Detecting Signals in Genomic Sequences.
131-142
- Simon Rogers, Mark Girolami, Colin Campbell, Rainer Breitling:
The Latent Process Decomposition of cDNA Microarray Data Sets.
143-156
- Jinbo Xu:
Fold Recognition by Predicted Alignment Accuracy.
157-165
- Li Shen, Eng Chong Tan:
Dimension Reduction-Based Penalized Logistic Regression for Cancer Classification Using Microarray Data.
166-175
Volume 2, Number 3, July 2005
- Charles X. Ling, William Stafford Noble, Qiang Yang:
Guest Editor's Introduction to the Special Issue: Machine Learning for Bioinformatics-Part 2.
177-178
- Alexander Schliep, Ivan G. Costa, Christine Steinhoff, Alexander Schönhuth:
Analyzing Gene Expression Time-Courses.
179-193
- Anshul Kundaje, Manuel Middendorf, Feng Gao, Chris Wiggins, Christina S. Leslie:
Combining Sequence and Time Series Expression Data to Learn Transcriptional Modules.
194-202
- Samuel Kaski, Janne Nikkilä, Janne Sinkkonen, Leo Lahti, Juha E. A. Knuuttila, Christophe Roos:
Associative Clustering for Exploring Dependencies between Functional Genomics Data Sets.
203-216
- Jingfen Zhang, Wen Gao, Jinjin Cai, Simin He, Rong Zeng, Runsheng Chen:
Predicting Molecular Formulas of Fragment Ions with Isotope Patterns in Tandem Mass Spectra.
217-230
- Ed Keedwell, Ajit Narayanan:
Discovering Gene Networks with a Neural-Genetic Hybrid.
231-242
- John Hawkins, Mikael Bodén:
The Applicability of Recurrent Neural Networks for Biological Sequence Analysis.
243-253
- Mikael Gustafsson, Michael Hornquist, Anna Lombardi:
Constructing and Analyzing a Large-Scale Gene-to-Gene Regulatory Network-Lasso-Constrained Inference and Biological Validation.
254-261
- Cigdem Demir, S. Humayun Gultekin, Bülent Yener:
Learning the Topological Properties of Brain Tumors.
262-270
Volume 2, Number 4, October 2005
- Trevor M. Cickovski, Chengbang Huang, Rajiv Chaturvedi, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesús A. Izaguirre:
A Framework for Three-Dimensional Simulation of Morphogenesis.
273-288
- Riccardo Boscolo, Chiara Sabatti, James C. Liao, Vwani P. Roychowdhury:
A Generalized Framework for Network Component Analysis.
289-301
- Xin Chen, Jie Zheng, Zheng Fu, Peng Nan, Yang Zhong, Stefano Lonardi, Tao Jiang:
Assignment of Orthologous Genes via Genome Rearrangement.
302-315
- Heather L. Turner, Trevor C. Bailey, Wojtek J. Krzanowski, Cheryl A. Hemingway:
Biclustering Models for Structured Microarray Data.
316-329
- José L. Sevilla Campo, Victor Segura, Adam Podhorski, Elizabeth Guruceaga, Jose M. Mato, Luis A. Martínez-Cruz, Fernando J. Corrales, Angel Rubio:
Correlation between Gene Expression and GO Semantic Similarity.
330-338
- Sungroh Yoon, Christine Nardini, Luca Benini, Giovanni De Micheli:
Discovering Coherent Biclusters from Gene Expression Data Using Zero-Suppressed Binary Decision Diagrams.
339-354
- Vincent Shin-Mu Tseng, Ching-Pin Kao:
Efficiently Mining Gene Expression Data via a Novel Parameterless Clustering Method.
355-365
- Shaojie Zhang, Brian Haas, Eleazar Eskin, Vineet Bafna:
Searching Genomes for Noncoding RNA Using FastR.
366-379
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