Volume 5, Number 1, January 2008
Clare Bates Congdon, Joseph C. Aman, Gerardo M. Nava, H. Rex Gaskins, Carolyn J. Mattingly: An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach. 1-14- Riccardo Boscolo, James C. Liao, Vwani P. Roychowdhury: An Information Theoretic Exploratory Method for Learning Patterns of Conditional Gene Coexpression from Microarray Data. 15-24
- Kay C. Wiese, Alain Deschênes, Andrew Hendriks: RnaPredict-An Evolutionary Algorithm for RNA Secondary Structure Prediction. 25-41
- Diego Rother, Guillermo Sapiro, Vijay Pande: Statistical Characterization of Protein Ensembles. 42-55
- Yun Cui, Lusheng Wang, Daming Zhu, Xiaowen Liu: A (1.5 + epsilon)-Approximation Algorithm for Unsigned Translocation Distance. 56-66
- Tuan Zea Tan, Geok See Ng, Chai Quek: A Novel Biologically and Psychologically Inspired Fuzzy Decision Support System: Hierarchical Complementary Learning. 67-79
- Federica Ciocchetta, Corrado Priami, Paola Quaglia: An Automatic Translation of SBML into Beta-Binders. 80-90
- Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, Itsik Pe'er: Computational Problems in Perfect Phylogeny Haplotyping: Typing without Calling the Allele. 101-109
- Zong-Xian Yin, Jung-Hsien Chiang: Novel Algorithm for Coexpression Detection in Time-Varying Microarray Data Sets. 120-135
- Adrien Goëffon, Jean-Michel Richer, Jin-Kao Hao: Progressive Tree Neighborhood Applied to the Maximum Parsimony Problem. 136-145
Volume 5, Number 2, April 2008
- Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru: Consensus Genetic Maps as Median Orders from Inconsistent Sources. 161-171
- John Thomas, Naren Ramakrishnan, Chris Bailey-Kellogg: Graphical Models of Residue Coupling in Protein Families. 183-197
- Jesús P. Mena-Chalco, Helaine Carrer, Yossi Zana, Roberto M. Cesar: Identification of Protein Coding Regions Using the Modified Gabor-Wavelet Transform. 198-207
- Hidde de Jong, Michel Page: Search for Steady States of Piecewise-Linear Differential Equation Models of Genetic Regulatory Networks. 208-222
- Avital Sadot, Jasmin Fisher, Dan Barak, Yishai Admanit, Michael J. Stern, E. Jane Albert Hubbard, David Harel: Toward Verified Biological Models. 223-234
- Andreas Spillner, Binh T. Nguyen, Vincent Moulton: Computing Phylogenetic Diversity for Split Systems. 235-244
- Giuseppe Lancia, R. Ravi, Romeo Rizzi: Haplotyping for Disease Association: A Combinatorial Approach. 245-251
- Alexander Gusev, Ion I. Mandoiu, Bogdan Pasaniuc: Highly Scalable Genotype Phasing by Entropy Minimization. 252-261
- Wentao Zhao, Erchin Serpedin, Edward R. Dougherty: Inferring Connectivity of Genetic Regulatory Networks Using Information-Theoretic Criteria. 262-274
- Magnus Bordewich, Charles Semple: Nature Reserve Selection Problem: A Tight Approximation Algorithm. 275-280
- Yong-Hsian Hsieh, Chih-Chiang Yu, Biing-Feng Wang: Optimal Algorithms for the Interval Location Problem with Range Constraints on Length and Average. 281-290
- Susanna L. Lamers, Marco Salemi, Michael S. McGrath, Gary B. Fogel: Prediction of R5, X4, and R5X4 HIV-1 Coreceptor Usage with Evolved Neural Networks. 291-300
- Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie: Shorelines of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems. 301-312
- Dumitru Brinza, Alexander Zelikovsky: 2SNP: Scalable Phasing Method for Trios and Unrelated Individuals. 313-318
Volume 5, Number 3, July 2008
- Ion I. Mandoiu, Yi Pan, Alexander Zelikovsky: Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. 321-322
- Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ravi, Russell Schwartz: Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference. 323-331
- Matthias Bernt, Daniel Merkle, Martin Middendorf: Solving the Preserving Reversal Median Problem. 332-347
- Marília D. V. Braga, Marie-France Sagot, Celine Scornavacca, Eric Tannier: Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution. 348-356
- Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: Reconstruction of 3D Structures From Protein Contact Maps. 357-367
- George Lee, Carlos Rodriguez, Anant Madabhushi: Investigating the Efficacy of Nonlinear Dimensionality Reduction Schemes in Classifying Gene and Protein Expression Studies. 368-384
- Hyuk Cho, Inderjit S. Dhillon: Coclustering of Human Cancer Microarrays Using Minimum Sum-Squared Residue Coclustering. 385-400
- Man-Wai Mak, Jian Guo, Sun-Yuan Kung: PairProSVM: Protein Subcellular Localization Based on Local Pairwise Profile Alignment and SVM. 416-422
- Laura Elo, Sanna Filen, Riitta Lahesmaa, Tero Aittokallio: Reproducibility-Optimized Test Statistic for Ranking Genes in Microarray Studies. 423-431
- Douglas Stott Parker Jr., Ruey-Lung Hsiao, Yi Xing, Alissa M. Resch, Christopher J. Lee: Solving the Problem of Trans-Genomic Query with Alignment Tables. 432-447
- Zaher Dawy, Michel Sarkis, Joachim Hagenauer, Jakob C. Mueller: Fine-Scale Genetic Mapping Using Independent Component Analysis. 448-460
- Michael D. Hendy, Sagi Snir: Hadamard Conjugation for the Kimura 3ST Model: Combinatorial Proof Using Path Sets. 461-471
Volume 5, Number 4, October 2008
- Dan Gusfield: EIC Editorial. 481
- Raffaele Giancarlo, Sridhar Hannenhalli: Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics. 482-483
- Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka: Improving Strand Pairing Prediction through Exploring Folding Cooperativity. 484-491
- Loredana M. Genovese, Filippo Geraci, Marco Pellegrini: SpeedHap: An Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate andLow Coverage. 492-502
- Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson: Seeded Tree Alignment. 503-513
- Mukul S. Bansal, Oliver Eulenstein: An Omega(n^2/ log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem. 514-524
- Xueyi Wang, Jack Snoeyink: Defining and Computing Optimum RMSD for Gapped and Weighted Multiple-Structure Alignment. 525-533
- Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman: Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. 534-545
- Eagu Kim, John D. Kececioglu: Learning Scoring Schemes for Sequence Alignment from Partial Examples. 546-556
- Alexander Schliep, Roland Krause: Efficient Algorithms for the Computational Design of Optimal Tiling Arrays. 557-567
- Zeyun Yu, Chandrajit L. Bajaj: Computational Approaches for Automatic Structural Analysis of Large Biomolecular Complexes. 568-582
- Yann Christinat, Bernd Wachmann, Lei Zhang: Gene Expression Data Analysis Using a Novel Approach to Biclustering Combining Discrete and Continuous Data. 583-593
- Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie-France Sagot: An Introduction to Metabolic Networks and Their Structural Analysis. 594-617
- Cedric Gondro, Brian P. Kinghorn: Optimization of cDNA Microarray Experimental Designs Using an Evolutionary Algorithm. 630-638
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last updated on 2013-06-18T211851 by the dblp team