Volume 408, Number 1, November 2008
Computational Methods in Systems Biology
Preface
Contributions
- Mark Girolami:
Bayesian inference for differential equations.
4-16

- Alberto Credi, Marco Garavelli, Cosimo Laneve, Sylvain Pradalier, Serena Silvi, Gianluigi Zavattaro:
nanoK: A calculus for the modeling and simulation of nano devices.
17-30

- Raya Khanin, Desmond J. Higham:
Chemical Master Equation and Langevin regimes for a gene transcription model.
31-40

- Federica Ciocchetta, Jane Hillston, Martin Kos, David Tollervey:
Modelling co-transcriptional cleavage in the synthesis of yeast pre-rRNA.
41-54

- François Fages, Aurélien Rizk:
On temporal logic constraint solving for analyzing numerical data time series.
55-65

- Andrea Bracciali, Marcello Brunelli, Enrico Cataldo, Pierpaolo Degano:
Synapses as stochastic concurrent systems.
66-82

- Lorenzo Dematté, Corrado Priami, Alessandro Romanel, Orkun S. Soyer:
Evolving BlenX programs to simulate the evolution of biological networks.
83-96

Volume 408, Numbers 2-3, November 2008
Excursions in Algorithmics:
A Collection of Papers in Honor of Franco P. Preparata
Contributions
- Franco P. Preparata:
The unpredictable deviousness of models.
99-105

- Alberto Apostolico, Claudia Tagliacollo:
Incremental discovery of the irredundant motif bases for all suffixes of a string in O(n2logn) time.
106-115

- Luca Allulli, Giorgio Ausiello, Vincenzo Bonifaci, Luigi Laura:
On the power of lookahead in on-line server routing problems.
116-128

- Melanie Badent, Emilio Di Giacomo, Giuseppe Liotta:
Drawing colored graphs on colored points.
129-142

- Sandeep N. Bhatt, Gianfranco Bilardi, Geppino Pucci:
Area-time tradeoffs for universal VLSI circuits.
143-150

- Mary Ellen Bock, Claudio Garutti, Concettina Guerra:
Cavity detection and matching for binding site recognition.
151-162

- Jean-Daniel Boissonnat, Camille Wormser, Mariette Yvinec:
Anisotropic diagrams: Labelle Shewchuk approach revisited.
163-173

- Luca Castelli Aleardi, Olivier Devillers, Gilles Schaeffer:
Succinct representations of planar maps.
174-187

- Bruno Codenotti, Amin Saberi, Kasturi R. Varadarajan, Yinyu Ye:
The complexity of equilibria: Hardness results for economies via a correspondence with games.
188-198

- Michael T. Goodrich:
Pipelined algorithms to detect cheating in long-term grid computations.
199-207

- Kazuo Iwama, Hiroki Morizumi, Jun Tarui:
Reductions for monotone Boolean circuits.
208-212

- Irit Katriel, Claire Kenyon-Mathieu, Eli Upfal:
Commitment under uncertainty: Two-stage stochastic matching problems.
213-223

- Charalampos Papamanthou, Ioannis G. Tollis:
Algorithms for computing a parameterized st-orientation.
224-240

- Eric Rachlin, John E. Savage:
Nanowire addressing with randomized-contact decoders.
241-261

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