Mark S. Alber

Xiaomin Liu, Cameron W. Harvey, Haitao Wang, Mark S. Alber, Danny Z. Chen: Detecting and Tracking Motion of Myxococcus xanthus Bacteria in Swarms. MICCAI (1) 2012: 373-380

Jian Mu, Xiaomin Liu, Malgorzata M. Kamocka, Zhiliang Xu, Mark S. Alber, Elliot D. Rosen, Danny Z. Chen: Segmentation, Reconstruction, and Analysis of Blood Thrombus Formation in 3D 2-Photon Microscopy Images. EURASIP J. Adv. Sig. Proc. 2010 (2010)

Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale Kaiser, Jesús A. Izaguirre: Belief propagation estimation of protein and domain interactions using the sum-product algorithm. IEEE Transactions on Information Theory 56(2): 742-755 (2010)

Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale Kaiser, Jesús A. Izaguirre: Estimation of Protein and Domain Interactions in the Switching Motility System of Myxococcus Xanthus. Pacific Symposium on Biocomputing 2010: 157-165

Mark S. Alber, Richard Gejji, Bogdan Kazmierczak: Existence of global solutions of a macroscopic model of cellular motion in a chemotactic field. Appl. Math. Lett. 22(11): 1645-1648 (2009)

Jianfeng Zhu, Yong-Tao Zhang, Stuart A. Newman, Mark S. Alber: Application of Discontinuous Galerkin Methods for Reaction-Diffusion Systems in Developmental Biology. J. Sci. Comput. 40(1-3): 391-418 (2009)

Jian Mu, Xiaomin Liu, Malgorzata M. Kamocka, Zhiliang Xu, Mark S. Alber, Elliot D. Rosen, Danny Z. Chen: Segmentation, reconstruction, and analysis of blood thrombi in 2-photon microscopy images. CBMS 2009: 1-8

Scott Christley, Xuelian Zhu, Stuart A. Newman, Mark S. Alber: Multiscale Agent-based Simulation for Chondrogenic Pattern Formation in Vitro. Cybernetics and Systems 38(7): 707-727 (2007)

Nan Chen, James A. Glazier, Jesús A. Izaguirre, Mark S. Alber: A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis. Computer Physics Communications 176(11-12): 670-681 (2007)

Trevor M. Cickovski, Kedar Aras, Maciej Swat, Roeland Merks, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesús A. Izaguirre: From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development. Computing in Science and Engineering 9(4): 50-60 (2007)

Scott Christley, Mark S. Alber, Stuart A. Newman: Patterns of Mesenchymal Condensation in a Multiscale, Discrete Stochastic Model. PLoS Computational Biology 3(4) (2007)

Yilin Wu, Yi Jiang, Dale Kaiser, Mark S. Alber: Social Interactions in Myxobacterial Swarming. PLoS Computational Biology 3(12) (2007)

Yi Jiang, Olga Sozinova, Mark S. Alber: On Modeling Complex Collective Behavior in Myxobacteria. Advances in Complex Systems 9(4): 353-367 (2006)

Nan Chen, James A. Glazier, Mark S. Alber: A Parallel Implementation of the Cellular Potts Model for Simulation of Cell-Based Morphogenesis. ACRI 2006: 58-67

Yilin Wu, Nan Chen, Matthew Rissler, Yi Jiang, Dale Kaiser, Mark S. Alber: CA Models of Myxobacteria Swarming. ACRI 2006: 192-203

Trevor M. Cickovski, Chengbang Huang, Rajiv Chaturvedi, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesús A. Izaguirre: A Framework for Three-Dimensional Simulation of Morphogenesis. IEEE/ACM Trans. Comput. Biology Bioinform. 2(4): 273-288 (2005)

Jesús A. Izaguirre, Rajiv Chaturvedi, Chengbang Huang, Trevor M. Cickovski, J. Coffland, Gilberto L. Thomas, Gabor Forgacs, Mark S. Alber, G. Hentschel, Stuart A. Newman, James A. Glazier: COMPUCELL, a multi-model framework for simulation of morphogenesis. Bioinformatics 20(7): 1129-1137 (2004)

Rajiv Chaturvedi, Chengbang Huang, Jesús A. Izaguirre, Stuart A. Newman, James A. Glazier, Mark S. Alber: A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of the Vertebrate Limb. ACRI 2004: 543-552

Arancha Casal, Cenk Sumen, Tim Reddy, Mark S. Alber, Peter P. Lee: A Cellular Automata Model of Early T Cell Recognition. ACRI 2004: 553-560

Rajiv Chaturvedi, Jesús A. Izaguirre, Chengbang Huang, Trevor M. Cickovski, P. Virtue, Gilberto L. Thomas, Gabor Forgacs, Mark S. Alber, G. Hentschel, Stuart A. Newman, James A. Glazier: Multi-model Simulations of Chicken Limb Morphogenesis. International Conference on Computational Science 2003: 39-49

Mark S. Alber, Charles Miller: Peakon solutions of the shallow water equation. Appl. Math. Lett. 14(1): 93-98 (2001)