Jonathan Arnold

Boanerges Aleman-Meza, Yihai Yu, Heinz-Bernd Schüttler, Jonathan Arnold, Thiab R. Taha: KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks. Computers & Mathematics with Applications 57(3): 420-435 (2009)

S. Tewari, Jonathan Arnold, Suchendra M. Bhandarkar: Likelihood of a Particular Order of Genetic Markers and the Construction of Genetic Maps. J. Bioinformatics and Computational Biology 6(1): 125-162 (2008)

S. Tewari, Suchendra M. Bhandarkar, Jonathan Arnold: Design and Analysis of an Efficient Recursive Linking Algorithm for Constructing Likelihood Based Genetic Maps for a Large Number of Markers. J. Bioinformatics and Computational Biology 5(2a): 201-250 (2007)

Jorge Cardoso, Amit P. Sheth, John A. Miller, Jonathan Arnold, Krys Kochut: Quality of service for workflows and web service processes. J. Web Sem. 1(3): 281-308 (2004)

Krys Kochut, Jonathan Arnold, Amit P. Sheth, John A. Miller, Eileen Kraemer, Ismailcem Budak Arpinar, Jorge Cardoso: IntelliGEN: A Distributed Workflow System for Discovering Protein-Protein Interactions. Distributed and Parallel Databases 13(1): 43-72 (2003)

Suchendra M. Bhandarkar, Jinling Huang, Jonathan Arnold: A Parallel Genetic Algorithm for Physical Mapping of Chromosomes. CSB 2003: 567-572

Xiang Fang, John A. Miller, Jonathan Arnold: J3DV: A Java-based 3D database visualization tool. Softw., Pract. Exper. 32(5): 443-463 (2002)

Suchendra M. Bhandarkar, Jonathan Arnold: Parallel Monte Carlo Methods for Physical Mapping of Chromosones. CSB 2002: 64-

David Hall, Suchendra M. Bhandarkar, Jonathan Arnold, Tongzhang Jiang: Physical mapping with automatic capture of hybridization data. Bioinformatics 17(3): 205-213 (2001)

Eileen Kraemer, Jian Wang, Jinhua Guo, Samuel Hopkins, Jonathan Arnold: An analysis of gene-finding programs for Neurospora crassa. Bioinformatics 17(10): 901-912 (2001)

Suchendra M. Bhandarkar, Salem Machaka, Sanjay Shete, Jonathan Arnold: Parallel Computation for Chromosome Reconstruction on a Cluster of Workstations. IPDPS 2000: 63-70

John D. Kececioglu, Sanjay Shete, Jonathan Arnold: Reconstructing distances in physical maps of chromosomes with nonoverlapping probes. RECOMB 2000: 183-192

Suchendra M. Bhandarkar, Salem Machaka, Sridhar Chirravuri, Jonathan Arnold: Parallel Computing for Chromosome Reconstruction via Ordering of DNA Sequences. Parallel Computing 24(8): 1177-1204 (1998)

Suchendra M. Bhandarkar, Sridhar Chirravuri, Jonathan Arnold: PARODS - a study of parallel algorithms for ordering DNA sequences. Computer Applications in the Biosciences 12(4): 269-280 (1996)

Suchendra M. Bhandarkar, Sridhar Chirravuri, Jonathan Arnold: Parallel Computing of Physical Maps--A Comparative Study in SIMD and MIMD Parallelism. Journal of Computational Biology 3(4): 503-528 (1996)

Yuhong Wang, Rolf A. Prade, James Griffith, William E. Timberlake, Jonathan Arnold: ODS_BOOTSTRAP: assessing the statistical reliability of physical maps by bootstrap resampling. Computer Applications in the Biosciences 10(6): 625-634 (1994)

A. Jamie Cuticchia, Jonathan Arnold, William E. Timberlake: PCAP: probe choice and analysis package - a set of programs to aid in choosing synthetic oligomers for contig mapping. Computer Applications in the Biosciences 9(2): 201-203 (1993)

A. Jamie Cuticchia, Jonathan Arnold, William E. Timberlake: ODS: ordering DNA sequences - a physical mapping algorithm based on simulated annealing. Computer Applications in the Biosciences 9(2): 215-219 (1993)

Krys Kochut, Jonathan Arnold, John A. Miller, Walter D. Potter: Design of an Object-Oriented Database for Reverse Genetics. ISMB 1993: 234-242

A. Jamie Cuticchia, Jonathan Arnold, H. Brody, William E. Timberlake: CMAP: contig mapping and analysis package, a relational database for chromosome reconstruction. Computer Applications in the Biosciences 8(5): 467-474 (1992)