Brian D. Athey

Alla Karnovsky, Terry E. Weymouth, Tim Hull, V. Glenn Tarcea, Giovanni Scardoni, Carlo Laudanna, Maureen A. Sartor, Kathleen A. Stringer, H. V. Jagadish, Charles F. Burant, Brian D. Athey, Gilbert S. Omenn: Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data. Bioinformatics 28(3): 373-380 (2012)

Maureen A. Sartor, Alexander S. Ade, Zach Wright, David J. States, Gilbert S. Omenn, Brian D. Athey, Alla Karnovsky: Metab2MeSH: annotating compounds with medical subject headings. Bioinformatics 28(10): 1408-1410 (2012)

Brian D. Athey, James D. Cavalcoli, H. V. Jagadish, Gilbert S. Omenn, Barbara Mirel, Matthias Kretzler, Charles F. Burant, Raphael D. Isokpehi, Charles DeLisi: The NIH National Center for Integrative Biomedical Informatics (NCIBI). JAMIA 19(2): 166-170 (2012)

Gang Su, Charles F. Burant, Christopher W. Beecher, Brian D. Athey, Fan Meng: Integrated metabolome and transcriptome analysis of the NCI60 dataset. BMC Bioinformatics 12(S-1): S36 (2011)

Jessica D. Tenenbaum, Patricia L. Whetzel, Kent Anderson, Charles D. Borromeo, Ivo D. Dinov, Davera Gabriel, Beth A. Kirschner, Barbara Mirel, Timothy D. Morris, Natasha Fridman Noy, Csongor Nyulas, David Rubenson, Paul R. Saxman, Harpreet Singh, Nancy Whelan, Zach Wright, Brian D. Athey, Michael J. Becich, Geoffrey S. Ginsburg, Mark A. Musen, Kevin A. Smith, Alice F. Tarantal, Daniel L. Rubin, Peter Lyster: The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. Journal of Biomedical Informatics 44(1): 137-145 (2011)

Sirarat Sarntivijai, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Brian D. Athey, Yongqun He: Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics. ICBO 2011

Joshua Buckner, Justin Wilson, Mark Seligman, Brian D. Athey, Stanley J. Watson, Fan Meng: The gputools package enables GPU computing in R. Bioinformatics 26(1): 134-135 (2010)

Maureen A. Sartor, Vasudeva Mahavisno, Venkateshwar G. Keshamouni, James D. Cavalcoli, Zach Wright, Alla Karnovsky, Rork Kuick, H. V. Jagadish, Barbara Mirel, Terry E. Weymouth, Brian D. Athey, Gilbert S. Omenn: ConceptGen: a gene set enrichment and gene set relation mapping tool. Bioinformatics 26(4): 456-463 (2010)

Jing Gao, V. Glenn Tarcea, Alla Karnovsky, Barbara R. Mirel, Terry E. Weymouth, Christopher W. Beecher, James D. Cavalcoli, Brian D. Athey, Gilbert S. Omenn, Charles F. Burant, H. V. Jagadish: Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks. Bioinformatics 26(7): 971-973 (2010)

Gang Su, Brian D. Athey, Fan Meng: GSearcher: Agile Attribute Querying for Biological Networks. Bioinformatics 26(24): 3138-3139 (2010)

David J. States, Alexander S. Ade, Zachary C. Wright, Aaron V. Bookvich, Brian D. Athey: MiSearch adaptive pubMed search tool. Bioinformatics 25(7): 974-976 (2009)

Weijian Xuan, Manhong Dai, Barbara Mirel, Jean Song, Brian D. Athey, Stanley J. Watson, Fan Meng: Open Biomedical Ontology-based Medline exploration. BMC Bioinformatics 10(S-5) (2009)

Andrew D. Boyd, Paul R. Saxman, Dale A. Hunscher, Kevin A. Smith, Timothy D. Morris, Michelle Kaston, Frederick Bayoff, Bruce Rogers, Pamela Hayes, Namrata Rajeev, Eva Kline-Rogers, Kim Eagle, Daniel J. Clauw, John F. Greden, Lee A. Green, Brian D. Athey: Application of Information Technology: The University of Michigan Honest Broker: A Web-based Service for Clinical and Translational Research and Practice. JAMIA 16(6): 784-791 (2009)

V. Glenn Tarcea, Terry E. Weymouth, Alexander S. Ade, Aaron V. Bookvich, Jing Gao, Vasudeva Mahavisno, Zach Wright, Adriane Chapman, Magesh Jayapandian, Arzucan Özgür, Yuanyuan Tian, James D. Cavalcoli, Barbara Mirel, Jignesh M. Patel, Dragomir R. Radev, Brian D. Athey, David J. States, H. V. Jagadish: Michigan molecular interactions r2: from interacting proteins to pathways. Nucleic Acids Research 37(Database-Issue): 642-646 (2009)

Weijian Xuan, Manhong Dai, Joshua Buckner, Barbara Mirel, Jean Song, Brian D. Athey, Stanley J. Watson, Fan Meng: Cross-Domain Neurobiology Data Integration and Exploration. IJCBS 2009: 37-43

Sirarat Sarntivijai, Alexander S. Ade, Brian D. Athey, David J. States: A bioinformatics analysis of the cell line nomenclature. Bioinformatics 24(23): 2760-2766 (2008)

Andrew D. Boyd, Charlie Hosner, Dale A. Hunscher, Brian D. Athey, Daniel J. Clauw, Lee A. Green: An 'Honest Broker' mechanism to maintain privacy for patient care and academic medical research. I. J. Medical Informatics 76(5-6): 407-411 (2007)

Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian D. Athey, David J. States, H. V. Jagadish: Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic Acids Research 35(Database-Issue): 566-571 (2007)

Brian D. Athey: Integrative Biomedical Informatics. BIBE 2007: 1450

Pinglang Wang, Manhong Dai, Weijian Xuan, Richard C. McEachin, Anne U. Jackson, Laura J. Scott, Brian D. Athey, Stanley J. Watson, Fan Meng: SNP Function Portal: a web database for exploring the function implication of SNP alleles. ISMB (Supplement of Bioinformatics) 2006: 523-529

Thomas J. Hacker, Brian D. Noble, Brian D. Athey: Adaptive data block scheduling for parallel TCP streams. HPDC 2005: 265-275

Beth A. Kirschner, Thomas J. Hacker, William A. Adamson, Brian D. Athey: Walden: A Scalable Solution for Grid Account Management. GRID 2004: 102-109

Thomas J. Hacker, Brian D. Noble, Brian D. Athey: Improving Throughput and Maintaining Fairness using Parallel TCP. INFOCOM 2004

Thomas J. Hacker, Brian D. Athey, Brian Noble: The End-to-End Performance Effects of Parallel TCP Sockets on a Lossy Wide-Area Network. IPDPS 2002

William Thigpen, Thomas J. Hacker, Brian D. Athey, Laura F. McGinnis: Distributed Accounting on the Grid. JCIS 2002: 1147-1150

Thomas J. Hacker, Brian Noble, Brian D. Athey: The effects of systemic packet loss on aggregate TCP flows. SC 2002: 1-15

Thomas J. Hacker, Brian D. Athey: A Methodology for Account Management in Grid Computing Environments. GRID 2001: 133-144