Brian B. Avants

Sandhitsu R. Das, Brian B. Avants, John Pluta, Hongzhi Wang, Jung Wook Suh, Michael W. Weiner, Susanne G. Mueller, Paul A. Yushkevich: Measuring longitudinal change in the hippocampal formation from in vivo high-resolution T2-weighted MRI. NeuroImage 60(2): 1266-1279 (2012)

Alexandra Badea, Sally L. Gewalt, Brian B. Avants, James J. Cook, G. Allan Johnson: Quantitative mouse brain phenotyping based on single and multispectral MR protocols. NeuroImage 63(3): 1633-1645 (2012)

Paul A. Yushkevich, Hongzhi Wang, John Pluta, Brian B. Avants: From label fusion to correspondence fusion: A new approach to unbiased groupwise registration. CVPR 2012: 956-963

Seung-Goo Kim, Brian B. Avants, Hyekyoung Lee, James C. Gee, Moo K. Chung, Richard J. Davidson, Jamie L. Hanson, Seth D. Pollak: Agreement between the white matter connectivity based on the tensor-based morphometry and the volumetric white matter parcellations based on diffusion tensor imaging. ISBI 2012: 42-45

Daniel H. Adler, Alex Yang Liu, John Pluta, Salmon Kadivar, Sylvia Orozco, Hongzhi Wang, James C. Gee, Brian B. Avants, Paul A. Yushkevich: Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI. ISBI 2012: 294-297

Paramveer S. Dhillon, Brian B. Avants, Lyle H. Ungar, James C. Gee: Partial sparse canonical correlation analysis (PSCCA) for population studies in medical imaging. ISBI 2012: 1132-1135

Brian B. Avants, Paramveer S. Dhillon, Benjamin M. Kandel, Philip A. Cook, Corey McMillan, Murray Grossman, James C. Gee: Eigenanatomy Improves Detection Power for Longitudinal Cortical Change. MICCAI (3) 2012: 206-213

Nicholas J. Tustison, Brian B. Avants: Diffeomorphic Directly Manipulated Free-Form Deformation Image Registration via Vector Field Flows. WBIR 2012: 31-39

Brian B. Avants, Nicholas J. Tustison, Gang Song, Baohua Wu, Michael Stauffer, Matthew McCormick, Hans J. Johnson, James C. Gee: A Unified Image Registration Framework for ITK. WBIR 2012: 266-275

Brian B. Avants, Nicholas J. Tustison, Gang Song, Philip A. Cook, Arno Klein, James C. Gee: A reproducible evaluation of ANTs similarity metric performance in brain image registration. NeuroImage 54(3): 2033-2044 (2011)

Hongzhi Wang, Sandhitsu R. Das, Jung Wook Suh, Murat Altinay, John Pluta, Caryne Craige, Brian B. Avants, Paul A. Yushkevich: A learning-based wrapper method to correct systematic errors in automatic image segmentation: Consistently improved performance in hippocampus, cortex and brain segmentation. NeuroImage 55(3): 968-985 (2011)

Brian B. Avants, Nicholas J. Tustison, Jue Wu, Philip A. Cook, James C. Gee: An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data. Neuroinformatics 9(4): 381-400 (2011)

Nicholas J. Tustison, Brian B. Avants, Marcelo Siqueira, James C. Gee: Topological Well-Composedness and Glamorous Glue: A Digital Gluing Algorithm for Topologically Constrained Front Propagation. IEEE Transactions on Image Processing 20(6): 1756-1761 (2011)

Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim: Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Med. Imaging 30(11): 1901-1920 (2011)

Seung-Goo Kim, Moo K. Chung, Jamie L. Hanson, Brian B. Avants, James C. Gee, Richard J. Davidson, Seth D. Pollak: Structural connectivity via the tensor-based morphometry. ISBI 2011: 808-811

Brian B. Avants, Paul A. Yushkevich, John Pluta, David Minkoff, Marc Korczykowski, John A. Detre, James C. Gee: The optimal template effect in hippocampus studies of diseased populations. NeuroImage 49(3): 2457-2466 (2010)

Paul A. Yushkevich, Brian B. Avants, Sandhitsu R. Das, John Pluta, Murat Altinay, Caryne Craige: Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: An illustration in ADNI 3 T MRI data. NeuroImage 50(2): 434-445 (2010)

Brian B. Avants, Philip A. Cook, Lyle H. Ungar, James C. Gee, Murray Grossman: Dementia induces correlated reductions in white matter integrity and cortical thickness: A multivariate neuroimaging study with sparse canonical correlation analysis. NeuroImage 50(3): 1004-1016 (2010)

Arno Klein, Satrajit S. Ghosh, Brian B. Avants, B. T. Thomas Yeo, Bruce Fischl, Babak A. Ardekani, James C. Gee, J. John Mann, Ramin V. Parsey: Evaluation of volume-based and surface-based brain image registration methods. NeuroImage 51(1): 214-220 (2010)

Paul A. Yushkevich, Hongzhi Wang, John Pluta, Sandhitsu R. Das, Caryne Craige, Brian B. Avants, Michael W. Weiner, Susanne G. Mueller: Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI. NeuroImage 53(4): 1208-1224 (2010)

Nicholas J. Tustison, Brian B. Avants, Philip A. Cook, Yuanjie Zheng, Alexander Egan, Paul A. Yushkevich, James C. Gee: N4ITK: Improved N3 Bias Correction. IEEE Trans. Med. Imaging 29(6): 1310-1320 (2010)

Hongzhi Wang, Sandhitsu R. Das, John Pluta, Caryne Craige, Murat Altinay, Brian B. Avants, Michael Weiner, Susanne G. Mueller, Paul A. Yushkevich: Standing on the Shoulders of Giants: Improving Medical Image Segmentation via Bias Correction. MICCAI (3) 2010: 105-112

Brian B. Avants, Philip A. Cook, Corey McMillan, Murray Grossman, Nicholas J. Tustison, Yuanjie Zheng, James C. Gee: Sparse Unbiased Analysis of Anatomical Variance in Longitudinal Imaging. MICCAI (1) 2010: 324-331

Paul A. Yushkevich, Brian B. Avants, John Pluta, Sandhitsu R. Das, David Minkoff, Dawn Mechanic-Hamilton, Simon Glynn, Stephen Pickup, Weixia Liu, James C. Gee, Murray Grossman, John A. Detre: A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. NeuroImage 44(2): 385-398 (2009)

Arno Klein, Jesper Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey: Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 46(3): 786-802 (2009)

Nicholas J. Tustison, Brian B. Avants, James C. Gee: Directly Manipulated Free-Form Deformation Image Registration. IEEE Transactions on Image Processing 18(3): 624-635 (2009)

Brian B. Avants, Charles L. Epstein, Murray Grossman, James C. Gee: Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain. Medical Image Analysis 12(1): 26-41 (2008)

Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, Stephen Pickup, Weixia Liu, John A. Detre, Murray Grossman, James C. Gee: Building an atlas of hippocampal subfields using postmortem MRI. ISBI 2008: 161-164

Sandhitsu R. Das, Dawn Mechanic-Hamilton, Marc Korczykowski, Brian B. Avants, John A. Detre, James C. Gee, Paul A. Yushkevich: Spatial correspondence based asymmetry analysis in FMRI. ISBI 2008: 616-619

Hui Sun, Brian B. Avants, Alejandro F. Frangi, Sebastián Ordas, James C. Gee, Paul A. Yushkevich: Branching medial models for cardiac shape representation. ISBI 2008: 1485-1488

Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, John A. Detre, Murray Grossman, James C. Gee: Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI. MICCAI (1) 2008: 510-517

Hui Sun, Brian B. Avants, Alejandro F. Frangi, Federico Sukno, James C. Gee, Paul A. Yushkevich: Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis. MICCAI (2) 2008: 766-773

Lydia Ng, Sayan D. Pathak, Chihchau Kuan, Christopher Lau, Hong-wei Dong, Andrew Sodt, Chinh Dang, Brian B. Avants, Paul A. Yushkevich, James C. Gee, David R. Haynor, Ed Lein, Allan Jones, Michael Hawrylycz: Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain. IEEE/ACM Trans. Comput. Biology Bioinform. 4(3): 382-393 (2007)

Hui Zhang, Brian B. Avants, Paul A. Yushkevich, John H. Woo, Sumei Wang, L. F. McCluskey, L. B. Elman, Elias R. Melhem, James C. Gee: High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis. IEEE Trans. Med. Imaging 26(11): 1585-1597 (2007)

Sandhitsu R. Das, Brian B. Avants, Murray Grossman, James C. Gee: Measuring Cortical Thickness Using An Image Domain Local Surface Model And Topology Preserving Segmentation. ICCV 2007: 1-8

Gang Song, Brian B. Avants, James C. Gee: Multi-start Method with Prior Learning for Image Registration. ICCV 2007: 1-8

Nicholas J. Tustison, Brian B. Avants, James C. Gee: Improved FFD B-Spline Image Registration. ICCV 2007: 1-8

Brian B. Avants, Charles L. Epstein, James C. Gee: Symmetric Shape Averaging in the Diffeomorphic Space. ISBI 2007: 636-639

Brian B. Avants, Chivon Anderson, Murray Grossman, James C. Gee: Spatiotemporal Normalization for Longitudinal Analysis of Gray Matter Atrophy in Frontotemporal Dementia. MICCAI (2) 2007: 303-310

Brian B. Avants, Jeffrey T. Duda, Hui Zhang, James C. Gee: Multivariate Normalization with Symmetric Diffeomorphisms for Multivariate Studies. MICCAI (1) 2007: 359-366

Brian B. Avants, P. Thomas Schoenemann, James C. Gee: Lagrangian frame diffeomorphic image registration: Morphometric comparison of human and chimpanzee cortex. Medical Image Analysis 10(3): 397-412 (2006)

Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee: Adaptive graph cuts with tissue priors for brain MRI segmentation. ISBI 2006: 762-765

Brian B. Avants, Charles L. Epstein, James C. Gee: Geodesic Image Normalization and Temporal Parameterization in the Space of Diffeomorphisms. MIAR 2006: 9-16

Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee: Integrated Graph Cuts for Brain MRI Segmentation. MICCAI (2) 2006: 831-838

Brian B. Avants, Murray Grossman, James C. Gee: Symmetric Diffeomorphic Image Registration: Evaluating Automated Labeling of Elderly and Neurodegenerative Cortex and Frontal Lobe. WBIR 2006: 50-57

Paul A. Yushkevich, Brian B. Avants, Lydia Ng, Michael Hawrylycz, Pablo D. Burstein, Hui Zhang, James C. Gee: 3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach. WBIR 2006: 230-237

Nicholas J. Tustison, Brian B. Avants, Tessa A. Sundaram, Jeffrey T. Duda, James C. Gee: A Generalization of Free-Form Deformation Image Registration Within the ITK Finite Element Framework. WBIR 2006: 238-246

Philip A. Cook, Hui Zhang, Brian B. Avants, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee, O. Ciccarelli, A. J. Thompson: An Automated Approach to Connectivity-Based Partitioning of Brain Structures. MICCAI 2005: 164-171

Tessa A. Sundaram, Brian B. Avants, James C. Gee: Towards a Dynamic Model of Pulmonary Parenchymal Deformation: Evaluation of Methods for Temporal Reparameterization of Lung Data. MICCAI (2) 2005: 328-335

Brian B. Avants, Charles L. Epstein, James C. Gee: Geodesic Image Interpolation: Parameterizing and Interpolating Spatiotemporal Images. VLSM 2005: 247-258

Brian B. Avants, James C. Gee: Symmetric Geodesic Shape Averaging and Shape Interpolation. ECCV Workshops CVAMIA and MMBIA 2004: 99-110

Brian B. Avants, James C. Gee: Shape Averaging with Diffeomorphic Flows for Atlas Creation. ISBI 2004: 595-598

Tessa A. Sundaram, Brian B. Avants, James C. Gee: A Dynamic Model of Average Lung Deformation Using Capacity-Based Reparameterization and Shape Averaging of Lung MR Images. MICCAI (2) 2004: 1000-1007

Brian B. Avants, James C. Gee: The Shape Operator for Differential Analysis of Images. IPMI 2003: 101-113

Brian B. Avants, James C. Gee: Continuous Curve Matching with Scale-Space Curvature and Extrema-Based Scale Selection. Scale-Space 2003: 798-813

Brian B. Avants, James C. Gee: Formulation and Evaluation of Variational Curve Matching with Prior Constraints. WBIR 2003: 21-30

Brian B. Avants, James C. Gee: Robust rotations between anatomical curves. ISBI 2002: 337-340

Abraham Dubb, Brian B. Avants, Ruben C. Gur, James C. Gee: Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation. MICCAI (2) 2002: 381-388

Brian B. Avants, Marcelo Siqueira, James C. Gee: Computing Match Functions for Curves in R² and R³ by Refining Polyline Approximations. MICCAI 2001: 1178-1179

Brian B. Avants, James P. Williams: An Adaptive Minimal Path Generation Technique for Vessel Tracking in CTA/CE-MRA Volume Images. MICCAI 2000: 707-716