Jan Baumbach

Richard Röttger, Prabhav Kalaghatgi, Peng Sun, Siomar de Castro Soares, Vasco Azevedo, Tobias Wittkop, Jan Baumbach: Density parameter estimation for finding clusters of homologous proteins - tracing actinobacterial pathogenicity lifestyles. Bioinformatics 29(2): 215-222 (2013)

Till Schneider, Anne-Christin Hauschild, Jörg Ingo Baumbach, Jan Baumbach: An Integrative Clinical Database and Diagnostics Platform for Biomarker Identification and Analysis in Ion Mobility Spectra of Human Exhaled Air. J. Integrative Bioinformatics 10(2) (2013)

Peng Sun, Jiong Guo, Jan Baumbach: Integrated simultaneous analysis of different biomedical data types with exact weighted bi-cluster editing. J. Integrative Bioinformatics 9(2) (2012)

Josch Pauling, Richard Röttger, Andreas Tauch, Vasco Azevedo, Jan Baumbach: CoryneRegNet 6.0 - Updated database content, new analysis methods and novel features focusing on community demands. Nucleic Acids Research 40(Database-Issue): 610-614 (2012)

Richard Röttger, Ulrich Rückert, Jan Taubert, Jan Baumbach: How Little Do We Actually Know? On the Size of Gene Regulatory Networks. IEEE/ACM Trans. Comput. Biology Bioinform. 9(5): 1293-1300 (2012)

Richard Röttger, Christoph Kreutzer, Thuy Duong Vu, Tobias Wittkop, Jan Baumbach: Online Transitivity Clustering of Biological Data with Missing Values. GCB 2012: 57-68

Jan Baumbach, Tobias Friedrich, Timo Kötzing, Anton Krohmer, Joachim Müller, Josch Pauling: Efficient algorithms for extracting biological key pathways with global constraints. GECCO 2012: 169-176

John H. Morris, Leonard Apeltsin, Aaron M. Newman, Jan Baumbach, Tobias Wittkop, Gang Su, Gary D. Bader, Thomas E. Ferrin: clusterMaker: a multi-algorithm clustering plugin for Cytoscape. BMC Bioinformatics 12: 436 (2011)

Tobias Wittkop, Sven Rahmann, Richard Röttger, Sebastian Böcker, Jan Baumbach: Extension and Robustness of Transitivity Clustering for Protein-Protein Interaction Network Analysis. Internet Mathematics 7(4): 255-273 (2011)

Nicolas Alcaraz, Hande Kücük, Jochen Weile, Anil Wipat, Jan Baumbach: KeyPathwayMiner: Detecting Case-Specific Biological Pathways Using Expression Data. Internet Mathematics 7(4): 299-313 (2011)

Tobias Wittkop, Sven Rahmann, Jan Baumbach: Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0. J. Integrative Bioinformatics 7(3) (2010)

Dorothea Emig, Nathan Salomonis, Jan Baumbach, Thomas Lengauer, Bruce R. Conklin, Mario Albrecht: AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Research 38(Web-Server-Issue): 755-762 (2010)

Jan Baumbach, Andreas Tauch, Sven Rahmann: Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks. Briefings in Bioinformatics 10(1): 75-83 (2009)

Jan Baumbach, Tobias Wittkop, Jochen Weile, Thomas Kohl, Sven Rahmann: MoRAine - A web server for fast computational transcription factor binding motif re-annotation. J. Integrative Bioinformatics 5(2) (2008)

Jan Baumbach: CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks. BMC Bioinformatics 8 (2007)

Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, Sven Rahmann: Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing. BMC Bioinformatics 8 (2007)

Jan Baumbach, Alexander Bunkowski, Sita Lange, Timm Oberwahrenbrock, Nils Kleinbölting, Sven Rahmann, Jörg Ingo Baumbach: IMS2 - An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath. J. Integrative Bioinformatics 4(3) (2007)

Jacob Köhler, Jan Baumbach, Jan Taubert, Michael Specht, Andre Skusa, Alexander Rüegg, Christopher J. Rawlings, Paul Verrier, Stephan Philippi: Graph-based analysis and visualization of experimental results with ONDEX. Bioinformatics 22(11): 1383-1390 (2006)

Jan Baumbach, Karina Brinkrolf, Tobias Wittkop, Andreas Tauch, Sven Rahmann: CoryneRegNet 2: An Integrative Bioinformatics Approach for Reconstruction and Comparison of Transcriptional Regulatory Networks in Prokaryotes. J. Integrative Bioinformatics 3(2) (2006)