Peer Bork

Clare Pacini, Francesco Iorio, Emanuel J. V. Gonçalves, Murat Iskar, Thomas Klabunde, Peer Bork, Julio Saez-Rodriguez: DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data. Bioinformatics 29(1): 132-134 (2013)

Pablo Minguez, Ivica Letunic, Luca Parca, Peer Bork: PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins. Nucleic Acids Research 41(Database-Issue): 306-311 (2013)

Andrea Franceschini, Damian Szklarczyk, Sune Frankild, Michael Kuhn, Milan Simonovic, Alexander Roth, Jianyi Lin, Pablo Minguez, Peer Bork, Christian von Mering, Lars Juhl Jensen: STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Research 41(Database-Issue): 808-815 (2013)

Sean Powell, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Michael Kuhn, Jean Muller, Roland Arnold, Thomas Rattei, Ivica Letunic, Tobias Doerks, Lars Juhl Jensen, Christian von Mering, Peer Bork: eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. Nucleic Acids Research 40(Database-Issue): 284-289 (2012)

Ivica Letunic, Tobias Doerks, Peer Bork: SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Research 40(Database-Issue): 302-305 (2012)

Sarah Hunter, Philip Jones, Alex Mitchell, Rolf Apweiler, Teresa K. Attwood, Alex Bateman, Thomas Bernard, David Binns, Peer Bork, Sarah W. Burge, Edouard De Castro, Penny C. Coggill, Matthew Corbett, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Matthew Fraser, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Conor McMenamin, Huaiyu Mi, Prudence Mutowo-Muellenet, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Sebastien Pesseat, Marco Punta, Antony F. Quinn, Catherine Rivoire, Amaia Sangrador-Vegas, Jeremy D. Selengut, Christian J. A. Sigrist, Maxim Scheremetjew, John G. Tate, Manjulapramila Thimmajanarthanan, Paul D. Thomas, Cathy H. Wu, Corin Yeats, Siew-Yit Yong: InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Research 40(Database-Issue): 306-312 (2012)

Michael Kuhn, Damian Szklarczyk, Andrea Franceschini, Christian von Mering, Lars Juhl Jensen, Peer Bork: STITCH 3: zooming in on protein-chemical interactions. Nucleic Acids Research 40(Database-Issue): 876-880 (2012)

Wei-Hua Chen, Pablo Minguez, Martin J. Lercher, Peer Bork: OGEE: an online gene essentiality database. Nucleic Acids Research 40(Database-Issue): 901-906 (2012)

Damian Szklarczyk, Andrea Franceschini, Michael Kuhn, Milan Simonovic, Alexander Roth, Pablo Minguez, Tobias Doerks, Manuel Stark, Jean Muller, Peer Bork, Lars Juhl Jensen, Christian von Mering: The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Research 39(Database-Issue): 561-568 (2011)

Takuji Yamada, Ivica Letunic, Shujiro Okuda, Minoru Kanehisa, Peer Bork: iPath2.0: interactive pathway explorer. Nucleic Acids Research 39(Web-Server-Issue): 412-415 (2011)

Ivica Letunic, Peer Bork: Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Research 39(Web-Server-Issue): 475-478 (2011)

Christopher J. Creevey, Jean Muller, Tobias Doerks, Julie D. Thompson, Detlev Arendt, Peer Bork: Identifying Single Copy Orthologs in Metazoa. PLoS Computational Biology 7(12) (2011)

Xing-Ming Zhao, Murat Iskar, Georg Zeller, Michael Kuhn, Vera van Noort, Peer Bork: Prediction of Drug Combinations by Integrating Molecular and Pharmacological Data. PLoS Computational Biology 7(12) (2011)

Jean Muller, Christopher J. Creevey, Julie D. Thompson, Detlev Arendt, Peer Bork: AQUA: automated quality improvement for multiple sequence alignments. Bioinformatics 26(2): 263-265 (2010)

Manimozhiyan Arumugam, Eoghan D. Harrington, Konrad U. Foerstner, Jeroen Raes, Peer Bork: SmashCommunity: a metagenomic annotation and analysis tool. Bioinformatics 26(23): 2977-2978 (2010)

Eoghan D. Harrington, Manimozhiyan Arumugam, Jeroen Raes, Peer Bork, David A. Relman: SmashCell: a software framework for the analysis of single-cell amplified genome sequences. Bioinformatics 26(23): 2979-2980 (2010)

Jean Muller, Damian Szklarczyk, Philippe Julien, Ivica Letunic, Alexander Roth, Michael Kuhn, Sean Powell, Christian von Mering, Tobias Doerks, Lars Juhl Jensen, Peer Bork: eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. Nucleic Acids Research 38(Database-Issue): 190-195 (2010)

Michael Kuhn, Damian Szklarczyk, Andrea Franceschini, Monica Campillos, Christian von Mering, Lars Juhl Jensen, Andreas Beyer, Peer Bork: STITCH 2: an interaction network database for small molecules and proteins. Nucleic Acids Research 38(Database-Issue): 552-556 (2010)

Stefan M. Woerner, Yan P. Yuan, Axel Benner, Sebastian Korff, Magnus von Knebel Doeberitz, Peer Bork: SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology. Nucleic Acids Research 38(Database-Issue): 682-689 (2010)

Murat Iskar, Monica Campillos, Michael Kuhn, Lars Juhl Jensen, Vera van Noort, Peer Bork: Drug-Induced Regulation of Target Expression. PLoS Computational Biology 6(9) (2010)

Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: InterPro: the integrative protein signature database. Nucleic Acids Research 37(Database-Issue): 211-215 (2009)

Ivica Letunic, Tobias Doerks, Peer Bork: SMART 6: recent updates and new developments. Nucleic Acids Research 37(Database-Issue): 229-232 (2009)

Lars Juhl Jensen, Michael Kuhn, Manuel Stark, Samuel Chaffron, Christopher J. Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering: STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Research 37(Database-Issue): 412-416 (2009)

Eoghan D. Harrington, Peer Bork: Sircah: a tool for the detection and visualization of alternative transcripts. Bioinformatics 24(17): 1959-1960 (2008)

Lars Juhl Jensen, Philippe Julien, Michael Kuhn, Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork: eggNOG: automated construction and annotation of orthologous groups of genes. Nucleic Acids Research 36(Database-Issue): 250-254 (2008)

Michael Kuhn, Christian von Mering, Monica Campillos, Lars Juhl Jensen, Peer Bork: STITCH: interaction networks of chemicals and proteins. Nucleic Acids Research 36(Database-Issue): 684-688 (2008)

Rune Linding, Lars Juhl Jensen, Adrian Pasculescu, Marina Olhovsky, Karen Colwill, Peer Bork, Michael B. Yaffe, Tony Pawson: NetworKIN: a resource for exploring cellular phosphorylation networks. Nucleic Acids Research 36(Database-Issue): 695-699 (2008)

Yannick Haudry, Hugo Berube, Ivica Letunic, Paul-Daniel Weeber, Julien Gagneur, Charles Girardot, Misha Kapushesky, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich: 4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Research 36(Database-Issue): 847-853 (2008)

Stefan Günther, Michael Kuhn, Mathias Dunkel, Monica Campillos, Christian Senger, Evangelia Petsalaki, Jessica Ahmed, Eduardo Garcia Urdiales, Andreas Gewiess, Lars Juhl Jensen, Reinhard Schneider, Roman Skoblo, Robert B. Russell, Philip E. Bourne, Peer Bork, Robert Preissner: SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Research 36(Database-Issue): 919-922 (2008)

Shujiro Okuda, Takuji Yamada, Masami Hamajima, Masumi Itoh, Toshiaki Katayama, Peer Bork, Susumu Goto, Minoru Kanehisa: KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Research 36(Web-Server-Issue): 423-426 (2008)

Yannick Haudry, Chuang Kee Ong, Laurence Ettwiller, Hugo Berube, Ivica Letunic, Misha Kapushesky, Paul-Daniel Weeber, Xi Wang, Julien Gagneur, Charles Girardot, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich: Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress. APBC 2008: 373-382

Ivica Letunic, Peer Bork: Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23(1): 127-128 (2007)

Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats: New developments in the InterPro database. Nucleic Acids Research 35(Database-Issue): 224-228 (2007)

Christian von Mering, Lars Juhl Jensen, Michael Kuhn, Samuel Chaffron, Tobias Doerks, Beate Krüger, Berend Snel, Peer Bork: STRING 7 - recent developments in the integration and prediction of protein interactions. Nucleic Acids Research 35(Database-Issue): 358-362 (2007)

Carolina Perez-Iratxeta, Peer Bork, Miguel A. Andrade-Navarro: Update of the G2D tool for prioritization of gene candidates to inherited diseases. Nucleic Acids Research 35(Web-Server-Issue): 212-216 (2007)

Jasmin Saric, Lars Juhl Jensen, Rossitza Ouzounova, Isabel Rojas, Peer Bork: Extraction of regulatory gene/protein networks from Medline. Bioinformatics 22(6): 645-650 (2006)

Parantu K. Shah, Peer Bork: LSAT: learning about alternative transcripts in MEDLINE. Bioinformatics 22(7): 857-865 (2006)

Ivica Letunic, Richard R. Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, Peer Bork: SMART 5: domains in the context of genomes and networks. Nucleic Acids Research 34(Database-Issue): 257-260 (2006)

Mikita Suyama, David Torrents, Peer Bork: PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Research 34(Web-Server-Issue): 609-612 (2006)

Mikita Suyama, Eoghan D. Harrington, Peer Bork, David Torrents: Identification and Analysis of Genes and Pseudogenes within Duplicated Regions in the Human and Mouse Genomes. PLoS Computational Biology 2(6) (2006)

Ulrik de Lichtenberg, Lars Juhl Jensen, Anders Fausbøll, Thomas Skøt Jensen, Peer Bork, Søren Brunak: Comparison of computational methods for the identification of cell cycle-regulated genes. Bioinformatics 21(7): 1164-1171 (2005)

Francesca Ciccarelli, Peer Bork: The WHy domain mediates the response to desiccation in plants and bacteria. Bioinformatics 21(8): 1304-1307 (2005)

Sean D. Hooper, Peer Bork: Medusa: a simple tool for interaction graph analysis. Bioinformatics 21(24): 4432-4433 (2005)

Raimund Tenhaken, Tobias Doerks, Peer Bork: DCD - a novel plant specific domain in proteins involved in development and programmed cell death. BMC Bioinformatics 6: 169 (2005)

Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu: InterPro, progress and status in 2005. Nucleic Acids Research 33(Database-Issue): 201-205 (2005)

Christian von Mering, Lars Juhl Jensen, Berend Snel, Sean D. Hooper, Markus Krupp, Mathilde Foglierini, Nelly Jouffre, Martijn A. Huynen, Peer Bork: STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Research 33(Database-Issue): 433-437 (2005)

Parantu K. Shah, Lars Juhl Jensen, Stéphanie Boué, Peer Bork: Extraction of Transcript Diversity from Scientific Literature. PLoS Computational Biology 1(1) (2005)

Torsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer: The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinformatics 20(2): 268-270 (2004)

Mikita Suyama, David Torrents, Peer Bork: BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments. Bioinformatics 20(12): 1968-1970 (2004)

Antonio Jesús Pérez, Carolina Perez-Iratxeta, Peer Bork, Guillermo Thode, Miguel A. Andrade: Gene annotation from scientific literature using mappings between keyword systems. Bioinformatics 20(13): 2084-2091 (2004)

Ivica Letunic, Richard R. Copley, Steffen Schmidt, Francesca Ciccarelli, Tobias Doerks, Jörg Schultz, Chris P. Ponting, Peer Bork: SMART 4.0: towards genomic data integration. Nucleic Acids Research 32(Database-Issue): 142-144 (2004)

Lars Juhl Jensen, Julien Lagarde, Christian von Mering, Peer Bork: ArrayProspector: a web resource of functional associations inferred from microarray expression data. Nucleic Acids Research 32(Web-Server-Issue): 445-448 (2004)

Jasmin Saric, Lars Juhl Jensen, Peer Bork, Rossitza Ouzounova, Isabel Rojas: Extracting Regulatory Gene Expression Networks From Pubmed. ACL 2004: 191-198

Roland Krause, Christian von Mering, Peer Bork: A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens. Bioinformatics 19(15): 1901-1908 (2003)

Parantu K. Shah, Carolina Perez-Iratxeta, Peer Bork, Miguel A. Andrade: Information extraction from full text scientific articles: Where are the keywords? BMC Bioinformatics 4: 20 (2003)

Francesca Ciccarelli, Elisa Izaurralde, Peer Bork: The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold. BMC Bioinformatics 4: 64 (2003)

Christian von Mering, Martijn A. Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel: STRING: a database of predicted functional associations between proteins. Nucleic Acids Research 31(1): 258-261 (2003)

Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov: The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research 31(1): 315-318 (2003)

Pål Puntervoll, Rune Linding, Christine Gemünd, Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. A. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Stanislaw Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson: ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Research 31(13): 3625-3630 (2003)

Carolina Perez-Iratxeta, Antonio Jesús Pérez, Peer Bork, Miguel A. Andrade: Update on XplorMed: a web server for exploring scientific literature. Nucleic Acids Research 31(13): 3866-3868 (2003)

Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist: InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites. Briefings in Bioinformatics 3(3): 225-235 (2002)

Steffen Schmidt, Peer Bork, Thomas Dandekar: A Versatile Structural Domain Analysis Server Using Profile Weight Matrices. Journal of Chemical Information and Computer Sciences 42(2): 405-407 (2002)

Ivica Letunic, Leo Goodstadt, Nicholas J. Dickens, Tobias Doerks, Jörg Schultz, Richard Mott, Francesca Ciccarelli, Richard R. Copley, Chris P. Ponting, Peer Bork: Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Research 30(1): 242-244 (2002)

D. Fredman, Marianne Siegfried, Yan P. Yuan, Peer Bork, Heikki Lehväslaiho, Anthony J. Brookes: HGVbase: a human sequence variation database emphasizing data quality and a broad spectrum of data sources. Nucleic Acids Research 30(1): 387-391 (2002)

Peer Bork: Comparative analysis of protein interaction networks. ECCB 2002: 64-64

Luis Sánchez-Pulido, Yan P. Yuan, Miguel A. Andrade, Peer Bork: NAIL-Network Analysis Interface for Linking HMMER results. Bioinformatics 16(7): 656-657 (2000)

Jörg Schultz, Richard R. Copley, Tobias Doerks, Chris P. Ponting, Peer Bork: SMART: a web-based tool for the study of genetically mobile domains. Nucleic Acids Research 28(1): 231-234 (2000)

Anthony J. Brookes, Heikki Lehväslaiho, Marianne Siegfried, Jana G. Boehm, Yan P. Yuan, Chandra M. Sarkar, Peer Bork, J. Flavio R. Ortigao: HGBASE: a database of SNPs and other variations in and around human genes. Nucleic Acids Research 28(1): 356-360 (2000)

Frank Eisenhaber, Peer Bork: Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries. Bioinformatics 15(7): 528-535 (1999)

Jens Hanke, Gerrit Lehmann, Peer Bork, Jens G. Reich: Associative database of protein sequences. Bioinformatics 15(9): 741-748 (1999)

Chris P. Ponting, Jörg Schultz, Frank Milpetz, Peer Bork: SMART: identification and annotation of domains from signalling and extracellular protein sequences. Nucleic Acids Research 27(1): 229-232 (1999)

Arvind K. Bansal, Peer Bork: Applying Logic Programming to Derive Novel Functional Information of Genomes. PADL 1999: 275-289

Peer Bork: Comparing genes and genomes (abstract): from polymorphism to phylogeny. RECOMB 1999: 69-76

Thomas Lengauer, Reinhard Schneider, Peer Bork, Douglas L. Brutlag, Janice I. Glasgow, Hans-Werner Mewes, Ralf Zimmer (Eds.): Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany. AAAI 1999, isbn 1-57735-083-9

Thomas Dandekar, Katrin Beyer, Peer Bork, Mary-Rose Kenealy, Kostas Pantopoulos, Matthias W. Hentze, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, Sonja Schreiber: Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches. Bioinformatics 14(3): 271-278 (1998)

Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork: Towards detection of orthologues in sequence databases. Bioinformatics 14(3): 285-289 (1998)

N. P. Brown, Chris Sander, Peer Bork: Frame: detection of genomic sequencing errors. Bioinformatics 14(4): 367-371 (1998)

Thomas Dandekar, Stefan Schuster, Martijn A. Huynen, Peer Bork: Pathway alignment: Application in the comparative analysis of glycolysis. German Conference on Bioinformatics 1998

Hedvig Hegyi, J. M. Lai, Peer Bork: The Sequence Alerting Server - a new WEB server. Computer Applications in the Biosciences 13(6): 619-620 (1997)

Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork: Towards detection of sequence orthologs. German Conference on Bioinformatics 1997: 25-30

Thomas Dandekar, Katrin Beyer, Peer Bork, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, W. Keller, Sonja Schreiber: Systematic genomic screening and analysis of mRNA in the 5' and 3` untranslated region. German Conference on Bioinformatics 1997: 31-32

Jens Hanke, Peer Bork, Jens G. Reich: Associative Data Base of Biomolecuiar Sequences. German Conference on Bioinformatics 1997: 149

Christos A. Ouzounis, Alfonso Valencia, Javier Tamames, Peer Bork, Chris Sander: The Functional Composition of Living Machines as a Design Principle for Artificial Organisms. ECAL 1995: 843-851

Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander: GeneQuiz: A Workbench for Sequence Analysis. ISMB 1994: 348-353

K. Rohde, Peer Bork: A fast, sensitive pattern-matching approach for protein sequences. Computer Applications in the Biosciences 9(2): 183-189 (1993)

Peer Bork: Entschlüsselung von Proteinfunktionen mit Hilfe des Computers: Erkennung und Interpretation entfernter Sequenzähnlichkeiten. Informatik in den Biowissenschaften 1993: 67-78