Steven E. Brenner

Degui Zhi, Maxim Shatsky, Steven E. Brenner: Alignment-free local structural search by writhe decomposition. Bioinformatics 26(9): 1176-1184 (2010)

Benjamin J. Blencowe, Steven E. Brenner, Timothy R. Hughes, Quaid Morris: Post-Transcriptional Gene Regulation: RNA-Protein Interactions, RNA Processing, mRNA Stability and Localization. Pacific Symposium on Biocomputing 2009: 545-548

Antonina Andreeva, Dave Howorth, John-Marc Chandonia, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin: Data growth and its impact on the SCOP database: new developments. Nucleic Acids Research 36(Database-Issue): 419-425 (2008)

Philip E. Bourne, Steven E. Brenner: Developing Computational Biology. PLoS Computational Biology 3(9) (2007)

Degui Zhi, Maxim Shatsky, Steven E. Brenner: Alignment-Free Local Structural Search by Writhe Decomposition. WABI 2007: 194-195

Andrew Smith, John-Marc Chandonia, Steven E. Brenner: ANDY: a general, fault-tolerant tool for database searching on computer clusters. Bioinformatics 22(5): 618-620 (2006)

Liliana R. Stefan, Rui Zhang, Aaron G. Levitan, Donna K. Hendrix, Steven E. Brenner, Stephen R. Holbrook: MeRNA: a database of metal ion binding sites in RNA structures. Nucleic Acids Research 34(Database-Issue): 131-134 (2006)

Barbara E. Engelhardt, Michael I. Jordan, Steven E. Brenner: A graphical model for predicting protein molecular function. ICML 2006: 297-304

Gavin E. Crooks, Steven E. Brenner: An alternative model of amino acid replacement. Bioinformatics 21(7): 975-980 (2005)

Gavin E. Crooks, Richard E. Green, Steven E. Brenner: Pairwise alignment incorporating dipeptide covariation. Bioinformatics 21(19): 3704-3710 (2005)

Gavin A. Price, Gavin E. Crooks, Richard E. Green, Steven E. Brenner: Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap. Bioinformatics 21(20): 3824-3831 (2005)

Philip E. Bourne, Steven E. Brenner, Michael B. Eisen: PLoS Computational Biology: A New Community Journal. PLoS Computational Biology 1(1) (2005)

Barbara E. Engelhardt, Michael I. Jordan, Kathryn E. Muratore, Steven E. Brenner: Protein Molecular Function Prediction by Bayesian Phylogenomics. PLoS Computational Biology 1(5) (2005)

Makio Tamura, Donna K. Hendrix, Peter S. Klosterman, Nancy R. B. Schimmelman, Steven E. Brenner, Stephen R. Holbrook: SCOR: Structural Classification of RNA, version 2.0. Nucleic Acids Research 32(Database-Issue): 182-184 (2004)

John-Marc Chandonia, Gary Hon, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, Steven E. Brenner: The ASTRAL Compendium in 2004. Nucleic Acids Research 32(Database-Issue): 189-192 (2004)

Antonina Andreeva, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin: SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Research 32(Database-Issue): 226-229 (2004)

Richard E. Green, Benjamin P. Lewis, R. Tyler Hillman, Marco Blanchette, Liana F. Lareau, Aaron T. Garnett, Donald C. Rio, Steven E. Brenner: Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes. ISMB (Supplement of Bioinformatics) 2003: 118-121

John-Marc Chandonia, Nigel S. Walker, Loredana Lo Conte, Patrice Koehl, Michael Levitt, Steven E. Brenner: ASTRAL compendium enhancements. Nucleic Acids Research 30(1): 260-263 (2002)

Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin: SCOP database in 2002: refinements accommodate structural genomics. Nucleic Acids Research 30(1): 264-267 (2002)

Peter S. Klosterman, Makio Tamura, Stephen R. Holbrook, Steven E. Brenner: SCOR: a Structural Classification of RNA database. Nucleic Acids Research 30(1): 392-394 (2002)

Steven E. Brenner: Genome Annotation and Protein Structure. CSB 2002: 4

Steven E. Brenner, Patrice Koehl, Michael Levitt: The ASTRAL compendium for protein structure and sequence analysis. Nucleic Acids Research 28(1): 254-256 (2000)

Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia: SCOP: a Structural Classification of Proteins database. Nucleic Acids Research 28(1): 257-259 (2000)

Steven E. Brenner, Derren Barken, Michael Levitt: The PRESAGE database for structural genomics. Nucleic Acids Research 27(1): 251-253 (1999)

Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia: SCOP: a Structural Classification of Proteins database. Nucleic Acids Research 27(1): 254-256 (1999)

Tim J. P. Hubbard, Alexey G. Murzin, Steven E. Brenner, Cyrus Chothia: SCOP: a structural classification of proteins database. Nucleic Acids Research 25(1): 236-239 (1997)

Steven E. Brenner, Tim J. P. Hubbard: A Specification for Defining and Annotating Regions of Macromolecular Structures. ISMB 1995: 66-74

Steven E. Brenner, Alan Berry: Protein Design by Optimization of a Sequence-Structure Quality Function. ISMB 1994: 44-52