Susan M. Bridges

Jonathan D. Wren, Mikhail G. Dozmorov, Dennis Burian, Rakesh Kaundal, Susan Bridges, Doris M. Kupfer: Proceedings of the 2012 MidSouth computational biology and bioinformatics society (MCBIOS) conference. BMC Bioinformatics 13(S-15): S1 (2012)

Mahmood Hossain, Susan M. Bridges, Yong Wang, Julia E. Hodges: An effective ensemble method for hierarchical clustering. C3S2E 2012: 18-26

Brandon M. Malone, Changhe Yuan, Eric A. Hansen, Susan Bridges: Improving the Scalability of . CoRR abs/1202.3744 (2012)

William S. Sanders, Nan Wang, Susan M. Bridges, Brandon M. Malone, Yoginder S. Dandass, Fiona M. McCarthy, Bindu Nanduri, Mark L. Lawrence, Shane C. Burgess: The Proteogenomic Mapping Tool. BMC Bioinformatics 12: 115 (2011)

Jonathan D. Wren, Doris M. Kupfer, Edward J. Perkins, Susan Bridges, Stephen Winters-Hilt, Mikhail G. Dozmorov, Ulisses Braga-Neto: Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinformatics 12(S-10): S1 (2011)

Fiona M. McCarthy, Cathy R. Gresham, Teresia J. Buza, Philippe Chouvarine, Lakshmi R. Pillai, Ranjit Kumar, Seval Ozkan, Hui Wang, Prashanti Manda, Tony Arick, Susan M. Bridges, Shane C. Burgess: AgBase: supporting functional modeling in agricultural organisms. Nucleic Acids Research 39(Database-Issue): 497-506 (2011)

William S. Sanders, C. Ian Johnston, Susan M. Bridges, Shane C. Burgess, Kenneth O. Willeford: Prediction of Cell Penetrating Peptides by Support Vector Machines. PLoS Computational Biology 7(7) (2011)

Brandon M. Malone, Changhe Yuan, Eric A. Hansen, Susan Bridges: Improving the Scalability of Optimal Bayesian Network Learning with External-Memory Frontier Breadth-First Branch and Bound Search. UAI 2011: 479-488

Jonathan D. Wren, Doris M. Kupfer, Edward J. Perkins, Susan Bridges, Daniel Berleant: Proceedings of the 2010 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinformatics 11(S-6): S1 (2010)

Rowena Y. Kelley, Cathy R. Gresham, Jonathan Harper, Susan M. Bridges, Marilyn Warburton, Leigh K. Hawkins, Olga Pechanova, Bela Peethambaran, Tibor Pechan, Dawn S. Luthe, J. E. Mylroie, Arunkanth Ankala, Seval Ozkan, W. B. Henry, W. Paul Williams: Integrated database for identifying candidate genes for Aspergillus flavus resistance in maize. BMC Bioinformatics 11(S-6): S25 (2010)

Prashanti Manda, McKinley G. Freeman, Susan M. Bridges, T. J. Jankun-Kelly, Bindu Nanduri, Fiona M. McCarthy, Shane C. Burgess: GOModeler- A tool for hypothesis-testing of functional genomics datasets. BMC Bioinformatics 11(S-6): S29 (2010)

Jonathan D. Wren, Yuriy Gusev, Raphael D. Isokpehi, Daniel Berleant, Ulisses Braga-Neto, Dawn Wilkins, Susan Bridges: Proceedings of the 2009 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinformatics 10(S-11): 1 (2009)

T. J. Jankun-Kelly, Andrew D. Lindeman, Susan M. Bridges: Exploratory visual analysis of conserved domains on multiple sequence alignments. BMC Bioinformatics 10(S-11): 7 (2009)

Bart H. J. van den Berg, Chamali Thanthiriwatte, Prashanti Manda, Susan M. Bridges: Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data. BMC Bioinformatics 10(S-11): 9 (2009)

Brandon M. Malone, Andy D. Perkins, Susan M. Bridges: Integrating phenotype and gene expression data for predicting gene function. BMC Bioinformatics 10(S-11): 20 (2009)

Nan Wang, Shane C. Burgess, Mark L. Lawrence, Susan Bridges: Proteogenomic Mapping for Structural Annotation of Prokaryote Genomes. IJCBS 2009: 103-106

Yoginder S. Dandass, Shane C. Burgess, Mark L. Lawrence, Susan M. Bridges: Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research. BMC Bioinformatics 9 (2008)

Surya Saha, Susan Bridges, Zenaida Magbanua, Daniel G. Peterson: Discovering relationships among dispersed repeats using spatial association rule mining. BMC Bioinformatics 9(S-10) (2008)

Jonathan D. Wren, Dawn Wilkins, James C. Fuscoe, Susan Bridges, Stephen Winters-Hilt, Yuriy Gusev: Proceedings of the 2008 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinformatics 9(S-9) (2008)

Nan Wang, Changhe Yuan, Shane C. Burgess, Bindu Nanduri, Mark L. Lawrence, Susan Bridges: Integrating Evidence for Evaluation of Potential Novel Protein-coding Genes Using Bayesian Networks. BIOCOMP 2008: 838-843

Susan M. Bridges, G. Bryce Magee, Nan Wang, W. Paul Williams, Shane C. Burgess, Bindu Nanduri: ProtQuant: a tool for the label-free quantification of MudPIT proteomics data. BMC Bioinformatics 8(S-7) (2007)

William S. Sanders, Susan M. Bridges, Fiona M. McCarthy, Bindu Nanduri, Shane C. Burgess: Prediction of peptides observable by mass spectrometry applied at the experimental set level. BMC Bioinformatics 8(S-7) (2007)

Dawn Wilkins, Yuriy Gusev, Raja Loganantharaj, Susan Bridges, Stephen Winters-Hilt, Jonathan D. Wren: Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. BMC Bioinformatics 8(S-7) (2007)

Fiona M. McCarthy, Susan M. Bridges, Nan Wang, G. Bryce Magee, W. Paul Williams, Dawn S. Luthe, Shane C. Burgess: AgBase: a unified resource for functional analysis in agriculture. Nucleic Acids Research 35(Database-Issue): 599-603 (2007)

Mahmood Hossain, Susan Bridges, Yong Wang, Julia E. Hodges: Extracting Partitional Clusters from Heterogeneous Datasets using Mutual Entropy. IRI 2007: 447-454

Mahmood Hossain, Susan M. Bridges, Yong Wang, Julia E. Hodges: An ensemble approach for generating partitional clusters from multiple cluster hierarchies. GrC 2006: 666-670

German Florez, Zhen Liu, Susan M. Bridges, Anthony Skjellum, Rayford B. Vaughn: Lightweight monitoring of MPI programs in real time. Concurrency and Computation: Practice and Experience 17(13): 1547-1578 (2005)

German Florez-Larrahondo, Susan Bridges, Eric A. Hansen: Incremental Estimation of Discrete Hidden Markov Models Based on a New Backward Procedure. AAAI 2005: 758-763

German Florez-Larrahondo, Susan M. Bridges, Rayford B. Vaughn: Efficient Modeling of Discrete Events for Anomaly Detection Using Hidden Markov Models. ISC 2005: 506-514

Zhen Liu, Susan M. Bridges: Dynamic Learning of Automata from the Call Stack Log for Anomaly Detection. ITCC (1) 2005: 774-779

Zhen Liu, Susan M. Bridges, Rayford B. Vaughn: Combining Static Analysis and Dynamic Learning to Build Accurate Intrusion Detection Models. IWIA 2005: 164-177

Ambareen Siraj, Rayford B. Vaughn, Susan M. Bridges: Decision Making For Network Health Assessment In An Intelligent Intrusion Detection System Architecture. International Journal of Information Technology and Decision Making 3(2): 281-306 (2004)

German Florez, Zhen Liu, Susan Bridges, Rayford B. Vaughn, Anthony Skjellum: Detecting Anomalies in High-Performance Parallel Programs. JDIM 2(2): 44-47 (2004)

Ambareen Siraj, Rayford B. Vaughn, Susan Bridges: Intrusion Sensor Data Fusion in an Intelligent Intrusion Detection System Architecture. HICSS 2004

German Florez, Zhen Liu, Susan Bridges, Rayford B. Vaughn, Anthony Skjellum: Detecting Anomalies in High-Performance Parallel Programs. ITCC (2) 2004: 30-34

Mahmood Hossain, Susan M. Bridges, Rayford B. Vaughn Jr.: Adaptive intrusion detection with data mining. SMC 2003: 3097-3103

Julia E. Hodges, Susan Bridges, Charles Sparrow, Govinda Weerakkody, Bo Tang, Chen Jun, Jason Luo: Assessing the Performance of a Waste Characterization Expert System. Applied Artificial Intelligence 15(4): 385-396 (2001)

Jianxiong Luo, Susan Bridges, Rayford B. Vaugham: Fuzzy Frequent Episodes for Real-time Intrusion Detection. FUZZ-IEEE 2001: 368-371

Jianxiong Luo, Susan Bridges: Mining fuzzy association rules and fuzzy frequency episodes for intrusion detection. Int. J. Intell. Syst. 15(8): 687-703 (2000)

Bruce Wooley, Susan Bridges, Julia E. Hodges, Anthony Skjellum: Scaling the Data Mining Step in Knowledge Discovery Using Oceanographic Data. IEA/AIE 2000: 85-92

Susan Bridges, Julia E. Hodges, Bruce Wooley, Donald Karpovich, George Brannon Smith: Knowledge Discovery in an Oceanographic Database. Appl. Intell. 11(2): 135-148 (1999)

Susan Bridges: A model for justification production by expert planning systems. Int. J. Hum.-Comput. Stud. 43(4): 593-619 (1995)

Susan Bridges: Graphics assignments in discrete mathematics. SIGCSE 1993: 83-86