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Fiona S. L. Brinkman
2010 – today
- 2013
[j20]Matthew D. Whiteside, Geoffrey L. Winsor, Matthew R. Laird, Fiona S. L. Brinkman: OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis. Nucleic Acids Research 41(Database-Issue): 366-376 (2013)- [j19]Karin Breuer, Amir K. Foroushani, Matthew R. Laird, Carol Chen, Anastasia Sribnaia, Raymond Lo, Geoffrey L. Winsor, Robert E. W. Hancock, Fiona S. L. Brinkman, David J. Lynn: InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucleic Acids Research 41(Database-Issue): 1228-1233 (2013)
- 2012
- [j18]Morgan G. I. Langille, Matthew R. Laird, William W. L. Hsiao, Terry A. Chiu, Jonathan A. Eisen, Fiona S. L. Brinkman: MicrobeDB: a locally maintainable database of microbial genomic sequences. Bioinformatics 28(14): 1947-1948 (2012)
- 2011
- [j17]Jeong Eun Min, Matthew D. Whiteside, Fiona S. L. Brinkman, Brad McNeney, Jinko Graham: A statistical approach to high-throughput screening of predicted orthologs. Computational Statistics & Data Analysis 55(1): 935-943 (2011)
- [j16]Nancy Y. Yu, Matthew R. Laird, Cory Spencer, Fiona S. L. Brinkman: PSORTdb - an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea. Nucleic Acids Research 39(Database-Issue): 241-244 (2011)
- [j15]Geoffrey L. Winsor, David K. W. Lam, Leanne Fleming, Raymond Lo, Matthew D. Whiteside, Nancy Y. Yu, Robert E. W. Hancock, Fiona S. L. Brinkman: Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Research 39(Database-Issue): 596-600 (2011)
- 2010
- [j14]Nancy Y. Yu, James R. Wagner, Matthew R. Laird, Gabor Melli, Sébastien Rey, Raymond Lo, Phuong Dao, Süleyman Cenk Sahinalp, Martin Ester, Leonard J. Foster, Fiona S. L. Brinkman: PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics 26(13): 1608-1615 (2010)
2000 – 2009
- 2009
- [j13]Morgan G. I. Langille, Fiona S. L. Brinkman: IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 25(5): 664-665 (2009)
- [j12]Geoffrey L. Winsor, Thea Van Rossum, Raymond Lo, Bhavjinder Khaira, Matthew D. Whiteside, Robert E. W. Hancock, Fiona S. L. Brinkman: Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Nucleic Acids Research 37(Database-Issue): 483-488 (2009)
- 2008
- [j11]Geoffrey L. Winsor, Bhavjinder Khaira, Thea Van Rossum, Raymond Lo, Matthew D. Whiteside, Fiona S. L. Brinkman: The Burkholderia Genome Database: facilitating flexible queries and comparative analyses. Bioinformatics 24(23): 2803-2804 (2008)
- [j10]Morgan G. I. Langille, William W. L. Hsiao, Fiona S. L. Brinkman: Evaluation of genomic island predictors using a comparative genomics approach. BMC Bioinformatics 9 (2008)
- 2006
- [j9]Debra L. Fulton, Yvonne Y. Li, Matthew R. Laird, Benjamin G. S. Horsman, Fiona M. Roche, Fiona S. L. Brinkman: Improving the specificity of high-throughput ortholog prediction. BMC Bioinformatics 7: 270 (2006)
- 2005
- [j8]Jennifer L. Gardy, Matthew R. Laird, Fei Chen, Sébastien Rey, C. J. Walsh, Martin Ester, Fiona S. L. Brinkman: PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 21(5): 617-623 (2005)
- [j7]Sébastien Rey, Michael Acab, Jennifer L. Gardy, Matthew R. Laird, Katalin de Fays, Christophe G. Lambert, Fiona S. L. Brinkman: PSORTdb: a protein subcellular localization database for bacteria. Nucleic Acids Research 33(Database-Issue): 164-168 (2005)
- [j6]Geoffrey L. Winsor, Raymond Lo, Shannan J. Ho Sui, Korine S. E. Ung, Shao-Shan Huang, Dean Cheng, Wai-Kay Ho Ching, Robert E. W. Hancock, Fiona S. L. Brinkman: Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. Nucleic Acids Research 33(Database-Issue): 338-343 (2005)
- 2004
- [j5]Karsten Hokamp, Fiona M. Roche, Michael Acab, Marc-Etienne Rousseau, Byron Kuo, David Goode, Dana Aeschliman, Jenny Bryan, Lorne A. Babiuk, Robert E. W. Hancock, Fiona S. L. Brinkman: ArrayPipe: a flexible processing pipeline for microarray data. Nucleic Acids Research 32(Web-Server-Issue): 457-459 (2004)
- [j4]Fiona M. Roche, Karsten Hokamp, Michael Acab, Lorne A. Babiuk, Robert E. W. Hancock, Fiona S. L. Brinkman: ProbeLynx: a tool for updating the association of microarray probes to genes. Nucleic Acids Research 32(Web-Server-Issue): 471-474 (2004)
- 2003
- [j3]William Hsiao, Ivan Wan, Steven J. Jones, Fiona S. L. Brinkman: IslandPath: aiding detection of genomic islands in prokaryotes. Bioinformatics 19(3): 418-420 (2003)
- [j2]Jennifer L. Gardy, Cory Spencer, Ke Wang, Martin Ester, Gábor E. Tusnády, István Simon, Sujun Hua, Katalin de Fays, Christophe G. Lambert, Kenta Nakai, Fiona S. L. Brinkman: PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria. Nucleic Acids Research 31(13): 3613-3617 (2003)
- [c1]Rong She, Fei Chen, Ke Wang, Martin Ester, Jennifer L. Gardy, Fiona S. L. Brinkman: Frequent-subsequence-based prediction of outer membrane proteins. KDD 2003: 436-445
- 2001
- [j1]Fiona S. L. Brinkman, Ivan Wan, Robert E. W. Hancock, Ann M. Rose, Steven J. Jones: PhyloBLAST: facilitating phylogenetic analysis of BLAST results. Bioinformatics 17(4): 385-387 (2001)
Coauthor Index
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last updated on 2013-01-12 20:01 CET by the dblp team