Yu-Dong Cai

Tao Huang, Lei Chen, Xiao-Jun Liu, Yu-Dong Cai: Predicting triplet of transcription factor - mediating enzyme - target gene by functional profiles. Neurocomputing 74(17): 3677-3681 (2011)

Lei Chen, Kai-Yan Feng, Yu-Dong Cai, Kuo-Chen Chou, Hai-Peng Li: Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition. BMC Bioinformatics 11: 293 (2010)

Lei Chen, Ziliang Qian, Kaiyan Feng, Yu-Dong Cai: Prediction of interactiveness between small molecules and enzymes by combining gene ontology and compound similarity. Journal of Computational Chemistry 31(8): 1766-1776 (2010)

Bing Niu, Lin Lu, Liang Liu, Tian Hong Gu, Kai-Yan Feng, Wen-Cong Lu, Yu-Dong Cai: HIV-1 protease cleavage site prediction based on amino acid property. Journal of Computational Chemistry 30(1): 33-39 (2009)

Lei Chen, Lin Lu, Kairui Feng, Wenjin Li, Jie Song, Lulu Zheng, Youlang Yuan, Zhenbing Zeng, Kai-Yan Feng, Wen-Cong Lu, Yu-Dong Cai: Multiple classifier integration for the prediction of protein structural classes. Journal of Computational Chemistry 30(14): 2248-2254 (2009)

Yu-Dong Cai, ZhiSong He, Kaiyan Feng: A committee of NNA classifiers for the prediction of the binding between miRNAs and the target genes using a novel coding method. SMC 2009: 4287-4292

Yu-Dong Cai, Guo-Ping Zhou: Predicting Protein-Protein Interactions with Pseudo Amino Acid Composition. BMEI (1) 2008: 158-163

Ziliang Qian, Lingyi Lu, Xiao-Jun Liu, Yu-Dong Cai, Yixue Li: An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization. Bioinformatics 23(18): 2449-2454 (2007)

Lingyi Lu, Ziliang Qian, Yu-Dong Cai, Yixue Li: ECS: An automatic enzyme classifier based on functional domain composition. Computational Biology and Chemistry 31(3): 226-232 (2007)

Peilin Jia, Tieliu Shi, Yu-Dong Cai, Yixue Li: Demonstration of two novel methods for predicting functional siRNA efficiency. BMC Bioinformatics 7: 271 (2006)

Sujun Li, Boshu Liu, Rong Zeng, Yu-Dong Cai, Yixue Li: Predicting O-glycosylation sites in mammalian proteins by using SVMs. Computational Biology and Chemistry 30(3): 203-208 (2006)

Guoqing Zhang, Zhi-Wei Cao, Qing-ming Luo, Yu-Dong Cai, Yixue Li: Operon prediction based on SVM. Computational Biology and Chemistry 30(3): 233-240 (2006)

Kuo-Chen Chou, Yu-Dong Cai: Predicting protein localization in budding Yeast. Bioinformatics 21(7): 944-950 (2005)

Kuo-Chen Chou, Yu-Dong Cai: Prediction of Membrane Protein Types by Incorporating Amphipathic Effects. Journal of Chemical Information and Modeling 45(2): 407-413 (2005)

Yu-Dong Cai, Kuo-Chen Chou: Predicting subcellular localization of proteins in a hybridization space. Bioinformatics 20(7): 1151-1156 (2004)

Yu-Dong Cai, Andrew J. Doig: Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition. Bioinformatics 20(8): 1292-1300 (2004)

Yu-Dong Cai, Xiao-Jun Liu, Kuo-Chen Chou: Prediction of protein secondary structure content by artificial neural network. Journal of Computational Chemistry 24(6): 727-731 (2003)

Yu-Dong Cai, Xiao-Jun Liu, Kuo-Chen Chou: Artificial Neural Network Model for Predicting Protein Subcellular Location. Computers & Chemistry 26(2): 179-182 (2002)

Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Kuo-Chen Chou: Prediction of Protein Structural Classes by Support Vector Machines. Computers & Chemistry 26(3): 293-296 (2002)

Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Kuo-Chen Chou: Artificial Neural Network Method for Predicting Protein Secondary Structure Content. Computers & Chemistry 26(4): 347-350 (2002)

Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Kuo-Chen Chou: Support vector machines for predicting HIV protease cleavage sites in protein. Journal of Computational Chemistry 23(2): 267-274 (2002)

Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Guo-Ping Zhou: Support Vector Machines for predicting protein structural class. BMC Bioinformatics 2: 3 (2001)