Thomas L. Casavant

Kishore Nannapaneni, Yehuda Ben-Shahar, Henry L. Keen, Michael J. Welsh, Thomas L. Casavant, Todd E. Scheetz: Computational identification of operon-like transcriptional loci in eukaryotes. Comp. in Bio. and Med. 43(6): 738-743 (2013)

Jinlu Cai, Henry L. Keen, Curt D. Sigmund, Thomas L. Casavant: Coex-Rank: An approach incorporating co-expression information for combined analysis of microarray data. J. Integrative Bioinformatics 9(1) (2012)

Jesse D. Walters, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz, John P. Robinson, Thomas L. Casavant: Validation of computational prediction of horizontal gene transfer events - XenoCluster. The Journal of Supercomputing 57(2): 141-150 (2011)

Kyle R. Taylor, Adam P. DeLuca, Corey W. Goodman, Bruce W. Tompkins, Todd E. Scheetz, Michael S. Hildebrand, Patrick L. M. Huygen, Richard J. H. Smith, Terry A. Braun, Thomas L. Casavant: AudioGene: Computer-based prediction of genetic factors involved in non-syndromic hearing impairment. AICCSA 2011: 75-79

Adam P. DeLuca, Alex H. Wagner, Kyle R. Taylor, Ben Faga, David Thole, Val C. Sheffield, Edwin M. Stone, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun: Sequencing and disease variation detection tools and techniques. AICCSA 2011: 80-83

Jesse D. Walters, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz, John P. Robinson, Thomas L. Casavant: Multi-granularity Parallel Computing in a Genome-Scale Molecular Evolution Application. PaCT 2009: 49-59

Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz: A knowledge-based approach to predict intragenic deletions or duplications. Bioinformatics 24(18): 1975-1979 (2008)

Brian O'Leary, Steven G. Davis, Michael F. Smith, Bartley Brown, Mathew B. Kemp, Hakeem G. Almabrazi, Jason A. Grundstad, Thomas Burns, Vladimir Leontiev, Jeaneen Andorf, Abbot F. Clark, Val C. Sheffield, Thomas L. Casavant, Todd E. Scheetz, Edwin M. Stone, Terry A. Braun: Transcript Annotation Prioritization and Screening System (TRApss) for Mutation Screening. J. Bioinformatics and Computational Biology 5(6): 1155-1172 (2007)

Todd E. Scheetz, Nishank Trivedi, Kevin T. Pedretti, Terry A. Braun, Thomas L. Casavant: Gene transcript clustering: a comparison of parallel approaches. Future Generation Comp. Syst. 21(4): 731-735 (2005)

Jesse D. Walters, Thomas L. Casavant, John P. Robinson, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz: XenoCluster: A Grid Computing Approach to Finding Ancient Evolutionary Genetic Anomalies. PaCT 2005: 355-366

Todd E. Scheetz, Nishank Trivedi, Chad A. Roberts, Tamara Kucaba, Brian Berger, Natalie L. Robinson, Clayton L. Birkett, Allen J. Gavin, Brian O'Leary, Terry A. Braun, Maria F. Bonaldo, John P. Robinson, Val C. Sheffield, Marcelo Bento Soares, Thomas L. Casavant: ESTprep: Preprocessing CDNA Sequence Reads. Bioinformatics 19(11): 1318-1324 (2003)

Terry A. Braun, Todd E. Scheetz, Gregg Webster, Abe Clark, Edwin M. Stone, Val C. Sheffield, Thomas L. Casavant: Identifying Candidate Disease Genes with High-Performance Computing. The Journal of Supercomputing 26(1): 7-24 (2003)

Nishank Trivedi, Kevin T. Pedretti, Terry A. Braun, Todd E. Scheetz, Thomas L. Casavant: Alternative Parallelization Strategies in EST Clustering. PaCT 2003: 384-393

Allen J. Gavin, Todd E. Scheetz, Chad A. Roberts, Brian O'Leary, Terry A. Braun, Val C. Sheffield, Marcelo Bento Soares, John P. Robinson, Thomas L. Casavant: Pooled library tissue tags for EST-based gene discovery. Bioinformatics 18(9): 1162-1166 (2002)

Nishank Trivedi, Jared Bischof, Steve Davis, Kevin T. Pedretti, Todd E. Scheetz, Terry A. Braun, Chad A. Roberts, Natalie L. Robinson, Val C. Sheffield, Marcelo Bento Soares, Thomas L. Casavant: Parallel creation of non-redundant gene indices from partial mRNA transcripts. Future Generation Comp. Syst. 18(6): 863-870 (2002)

R. C. Braun, Kevin T. Pedretti, Thomas L. Casavant, Todd E. Scheetz, Clayton L. Birkett, Chad A. Roberts: Parallelization of local BLAST service on workstation clusters. Future Generation Comp. Syst. 17(6): 745-754 (2001)

Thomas L. Casavant, Terry A. Braun, Sureshkumar Kaliannan, Todd E. Scheetz, Kyle J. Munn, Clayton L. Birkett: A parallel/distributed architecture for hierarchically heterogeneous web-based cooperative applications. Future Generation Comp. Syst. 17(6): 783-793 (2001)

Andrew B. Williams, Todd A. Krygowski, Thomas L. Casavant: I-DOCS: Distributed Agent-Assisted Knowledge Fusion for Disease Gene Discovery. ICPADS 2001: 698-705

Kevin T. Pedretti, Todd E. Scheetz, Terry A. Braun, Chad A. Roberts, Natalie L. Robinson, Thomas L. Casavant: A Parallel Expressed Sequence Tag (EST) Clustering Program. PaCT 2001: 490-497

Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Kyle J. Munn, Sureshkumar Kaliannan: A Parallel/Distributed Srchitecture for Hierarcally Heterogeneous Web-Based Cooperative Applications. HPCN Europe 1999: 391-401

Kevin T. Pedretti, Thomas L. Casavant, R. C. Braun, Todd E. Scheetz, Clayton L. Birkett, Chad A. Roberts: Three Complementary Approaches to Parallelization of Local BLAST Service on Workstation Clusters (invited paper). PaCT 1999: 271-282

Todd E. Scheetz, Terry A. Braun, Kyle J. Munn, Edwin M. Stone, Val C. Sheffield, Thomas L. Casavant: GenoMap: A Distributed System for Unifying Genotyping and Genetic Linkage Analysis. Parallel Computing 24(9-10): 1567-1592 (1998)

Richard D. Dietz, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Mark S. Andersland: Modeling the impact of run-time uncertainty on optimal computation scheduling using feedback. ICPP 1997: 481-488

Richard D. Dietz, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Mark S. Andersland: Using Run-Time Uncertainty to Robustly Schedule Parallel Computation. PaCT 1997: 13-24

Volker Strumpen, Balkrishna Ramkumar, Thomas L. Casavant, Sudhakar M. Reddy: Perspectives for High Performance Computing in Workstation Networks. HPCN Europe 1996: 880-889

Eugene V. Zima, Karthi R. Vadivelu, Thomas L. Casavant: Mapping Techniques for Parallel Evaluation of Chains of Recurrences. IPPS 1996: 620-624

Todd E. Scheetz, Julie A. Gannon, Richard D. Dietz, Terry A. Braun, Thomas L. Casavant, Mark S. Andersland: Accounting for Uncertainty in the Recovers of Traces for Parallel Computing Systems. Parcella 1996: 206-213

Volker Strumpen, Thomas L. Casavant: Implementing communication latency hiding in high-latency computer networks. HPCN Europe 1995: 86-93

Thomas L. Casavant, Mukesh Singhal: Readings in distributed computing systems. IEEE 1994, isbn 978-0-8186-3032-3, pp. I-X, 1-619

Julie A. Gannon, K. J. Williams, Mark S. Andersland, J. E. Lummp Jr., Thomas L. Casavant: Using Perturbation Tracking to Compensate for Intrusion in Message-Passing Systems. ICDCS 1994: 414-421

Thomas L. Casavant, Chi-Yuan Chin, Wen-Tsuen Chen, Kang G. Shin, Earl E. Swartzlander Jr., Joseph E. Urban: What Types of Research Papers Should We Be Writing? ICPADS 1994: 22-23

Volker Strumpen, Thomas L. Casavant: Exploting communication Latency Hiding for Parallel Network. ICPADS 1994: 620-627

Julie A. Gannon, K. J. Williams, Mark S. Andersland, Thomas L. Casavant, J. E. Lummp Jr.: Trace Recovery in Multi-Processing Systems: Architectural Considerations. ICPP 1994: 99-102

Thomas L. Casavant: Tools and Methods for Visualization of Parallel Systems and Computations - Guest Editor's Introduction. J. Parallel Distrib. Comput. 18(2): 103-104 (1993)

D. L. Bright, Samuel A. Fineberg, Brent H. Pease, M. L. Roderick, S. Sundaram, Thomas L. Casavant: Critical Performance Path Analysis, and Efficient Code Generation Issues, for the Seamless Architecture. IPPS 1993: 590-596

Thomas L. Casavant, James Arthur Kohl: The IMPROV Meta-Tool Design Methodology for Visualization of Parallel Programs. MASCOTS 1993: 22-27

Howard Jay Siegel, Seth Abraham, William L. Bain, Kenneth E. Batcher, Thomas L. Casavant, Doug DeGroot, Jack B. Dennis, David C. Douglas, Tse-Yun Feng, James R. Goodman, Alan Huang, Harry F. Jordan, J. Robert Jamp, Yale N. Patt, Alan Jay Smith, James E. Smith, Lawrence Snyder, Harold S. Stone, Russ Tuck, Benjamin W. Wah: Report of the Purdue Workshop on Grand Challenges in Computer Architecture for the Support of High Performance Computing. J. Parallel Distrib. Comput. 16(3): 199-211 (1992)

Mikhail J. Atallah, Christina Lock Black, Dan C. Marinescu, Howard Jay Siegel, Thomas L. Casavant: Models and Algorithms for Coscheduling Compute-Intensive Tasks on a Network of Workstations. J. Parallel Distrib. Comput. 16(4): 318-327 (1992)

Yiannis E. Papelis, Thomas L. Casavant: Specification and Analysis of Parallel/Distributed Software and Systems by Petri Nets With Transition Enabling Functions. IEEE Trans. Software Eng. 18(3): 252-261 (1992)

Samuel A. Fineberg, Thomas L. Casavant: A Preliminary Performance Evaluation of the Seamless Parallel Processing System Architecture. ICPP (1) 1992: 280-284

Samuel A. Fineberg, Thomas L. Casavant, Brent H. Pease: The Seamless Approach to Reconciling Communication and Locality in Distributed-Memory Parallel Systems. IPPS 1992: 51-56

James E. Lumpp Jr., Samuel A. Fineberg, Wayne G. Nation, Thomas L. Casavant, Edward C. Bronson, Howard Jay Siegel, Pierre H. Pero, Thomas Schwederski, Dan C. Marinescu: CAPS: A Coding Aid For PASM. Commun. ACM 34(11): 104-117 (1991)

Mukesh Singhal, Thomas L. Casavant: Distributed Computing Systems (Guest Editors' Introduction). IEEE Computer 24(8): 12-15 (1991)

Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel: Experimental Analysis of a Mixed-Mode Parallel Architecture Using Bitonic Sequence Sorting. J. Parallel Distrib. Comput. 11(3): 239-251 (1991)

Mikhail J. Atallah, C. Lock, Dan C. Marinescu, Howard Jay Siegel, Thomas L. Casavant: Co-scheduling compute-intensive tasks on a network of workstations: model and algorithms. ICDCS 1991: 344-352

Thomas L. Casavant, P. C. Bates, Thomas Bemmerl, G. M. Koob, D. A. Reed, Z. Segall: Debugging and performance monitoring for distributed systems: problems and prospects. ICDCS 1991: 378-383

Mark S. Andersland, Thomas L. Casavant: Recovering Unconrupted Event Traces from Corrupted Event Traces in Parallel/Distributed Computing Systems. ICPP (2) 1991: 108-112

Yiannis E. Papelis, Thomas L. Casavant: XPAT: An Interactive Graphical Tool for Synthesis of Concurrent Software Using Petri Nets. ICPP (2) 1991: 292-293

James Arthur Kohl, Thomas L. Casavant: Use of PARADISE: A Meta-Tool for Visualizing Parallel Systems. IPPS 1991: 561-567

Dan C. Marinescu, James E. Lumpp Jr., Thomas L. Casavant, Howard Jay Siegel: Models for Monitoring and Debugging Tools for Parallel and Distributed Software. J. Parallel Distrib. Comput. 9(2): 171-184 (1990)

Thomas L. Casavant, Jon G. Kuhl: A Communicating Finite Automata Approach to Modeling Distributed Computation and Its Application to Distributed Decision-Making. IEEE Trans. Computers 39(5): 628-639 (1990)

Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson: Experimental Application-Driven Architecture Analysis of an SIMD/MIMD Parallel Processing System. IEEE Trans. Parallel Distrib. Syst. 1(2): 195-205 (1990)

James E. Lumpp Jr., Howard Jay Siegel, Dan C. Marinescu, Thomas L. Casavant: Specification and Identification of Events for Debugging and Performance Monitoring of Distributed Multiprocessor Systems. ICDCS 1990: 476-483

Thomas Schwederski, Howard Jay Siegel, Thomas L. Casavant: Optimizing Task Migration Transfers Using Multistage Cube Networks. ICPP (1) 1990: 51-58

Silvio Picano, Thomas L. Casavant: An Experimental Analysis of Image Correlation on Shared versus Non-Shared Memory MIMD Parallel Computers. ICPP (3) 1990: 92-96

Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel: Experimental Analysis of a Mixed-Mode Parallel Architecture Performing Sequence Sorting. ICPP (3) 1990: 370-371

Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel: Experimental analysis of communication/data-conditional aspects of a mixed-mode parallel architecture via synthetic computations. SC 1990: 637-646

Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson: Experimental Application-Driven Architecture Analysis of an SIMD/MIMD Parallel Processing System. ICPP (1) 1989: 59-67

Thomas Schwederski, Howard Jay Siegel, Thomas L. Casavant: Task Migration Transfers in Multistage Cube Based Parallel Systems. ICPP (1) 1989: 296-305

Thomas L. Casavant, Jon G. Kuhl: A Taxonomy of Scheduling in General-Purpose Distributed Computing Systems. IEEE Trans. Software Eng. 14(2): 141-154 (1988)

Thomas L. Casavant, Jon G. Kuhl: Effects of Response and Stability on Scheduling in Distributed Computing Systems. IEEE Trans. Software Eng. 14(11): 1578-1588 (1988)

Samuel A. Fineberg, Thomas L. Casavant, Thomas Schwederski, Howard Jay Siegel: Non-Deterministic Instruction Time Experiments on the PASM System Prototype. ICPP (1) 1988: 444-451

Thomas L. Casavant, Jon G. Kuhl: Analysis of Three Dynamic Distributed Load-Balancing Strategies with Varying Global Information Requirements. ICDCS 1987: 185-193

Thomas L. Casavant, Jon G. Kuhl: A Formal Model of Distributed Decision-Making and Its Application to Distributed Load Balancing. ICDCS 1986: 232-239