Yidong Chen

Nguyen Nguyen, Ying Ann Chiao, Yufei Huang, Shou-Jiang Gao, Merry Lindsey, Yidong Chen, Yufang Jin: Temporal clustering of gene expression patterns using short-time segments. I. J. Functional Informatics and Personalised Medicine 4(1): 32-46 (2012)

Fang-Han Hsu, Erchin Serpedin, Yidong Chen, Edward R. Dougherty: Stochastic Modeling of the Relationship between Copy Number and Gene Expression Based on Transcriptional Logic. IEEE Trans. Biomed. Engineering 59(1): 272-280 (2012)

Fang-Han Hsu, Erchin Serpedin, Yidong Chen, Edward R. Dougherty: Evaluating Dynamic Effects of Copy Number Alterations on Gene Expression Using a Single Transcription Model. IEEE Trans. Biomed. Engineering 59(10): 2726-2736 (2012)

Jinsong Su, Hua Wu, Haifeng Wang, Yidong Chen, Xiaodong Shi, Huailin Dong, Qun Liu: Translation Model Adaptation for Statistical Machine Translation with Monolingual Topic Information. ACL (1) 2012: 459-468

Yidong Chen, Liwei Chen, Kun Xu: Learning Chinese Entity Attributes from Online Encyclopedia. APWeb Workshops 2012: 179-186

Tzu-Hung Hsiao, Hung-I Harry Chen, Yidong Chen, Yu-Heng Chen, Eric Y. Chuang: Using gene sets to identify putative drugs for breast cancer. BIBM 2012: 1-4

Lin Zhang, Hui Liu, Tzu-Hung Hsiao, Yidong Chen, Yufei Huang: An investigation of clinical outcome prediction from integrative genomic profiles in ovarian cancer. GENSiPS 2012: 103-106

Tzu-Hung Hsiao, Hung-I Harry Chen, Yidong Chen: Identification of functional genomic regions with copy number alteration in liver cancer. GENSiPS 2012: 155-158

Jinsong Su, Qun Liu, Huailin Dong, Yidong Chen, Xiaodong Shi: An Approach to N-Gram Language Model Evaluation in Phrase-Based Statistical Machine Translation. IALP 2012: 201-204

Tzu-Hung Hsiao, Hung-I Harry Chen, Patricia C. Sanchez-Diaz, Jaclyn Y. Hung, Yidong Chen, Yufei Huang: Gene sets enrichment analysis of miRNA expression profile. BIBM Workshops 2011: 449-454

Chifeng Ma, Yufei Huang, Huang-I. Harry, Yidong Chen: Comprehensive investigation of connectivity map data-towards a drug mode of action network for personalized thnerapy. BIBM Workshops 2011: 1045-1047

Fang-Han Hsu, Erchin Serpedin, Tzu-Hung Hsiao, Alexander J. R. Bishop, Edward R. Dougherty, Yidong Chen: Identifying genes associated with chemotherapy response in ovarian carcinomas based on DNA copy number and expression profiles. GENSiPS 2011: 46-49

Mark Doderer, Zachry Anguiano, Uthra Suresh, Ravi Dashnamoorthy, Alexander J. R. Bishop, Yidong Chen: Multisource biological pathway consolidation. GENSiPS 2011: 74-77

Fang-Han Hsu, Erchin Serpedin, Yidong Chen, Edward R. Dougherty: Stochastic modeling of dynamic effects of copy number alterations upon gene expression levels. GENSiPS 2011: 83-86

Hung-I Harry Chen, Tzu-Hung Hsiao, Yidong Chen, Charles Keller: S-score: A novel scoring method of gene signatures for molecular classification. GENSiPS 2011: 154-157

Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang: Computational prediction of microRNA regulatory pathways. GENSiPS 2011: 158-161

Jia Meng, Hung-I Harry Chen, Jianqiu Zhang, Yidong Chen, Yufei Huang: Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model. ICASSP 2011: 6012-6015

Hui Liu, Dong Yue, Yidong Chen, Shou-Jiang Gao, Yufei Huang: Improving performance of mammalian microRNA target prediction. BMC Bioinformatics 11: 476 (2010)

Jia Meng, Jianqiu Zhang, Yuan (Alan) Qi, Yidong Chen, Yufei Huang: Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model. EURASIP J. Adv. Sig. Proc. 2010 (2010)

Dong Yue, Hui Liu, Mingzhu Lu, Philip Chen, Yidong Chen, Yufei Huang: A Bayesian decision fusion approach for microRNA target prediction. BCB 2010: 214-221

Chifeng Ma, Hung-I Harry Chen, Yufei Huang, Yidong Chen: Constructing a compound mode-of-action network for personalized drug effectiveness prediction. BCB 2010: 520-528

Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang: An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks. BIBM 2010: 335-340

Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang: An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks. GENSiPS 2010: 1-4

Hui Liu, Lin Zhang, Qilong Sun, Yidong Chen, Yufei Huang: SysMicrO: A Novel Systems Approach for miRNA Target Prediction. ICIC (2) 2010: 9-16

Yidong Chen, Xiaodong Shi, Changle Zhou, Qingyang Hong: A word alignment model based on multiobjective evolutionary algorithms. Computers & Mathematics with Applications 57(11-12): 1724-1729 (2009)

Hui Liu, Dong Yue, Yidong Chen, Yufei Huang: A comprehensive study of a SVM-based miRNA target prediction algorithm. GENSiPS 2009: 1-4

Yidong Chen, Hung-I Harry Chen, Yufei Huang: Mapping miRNA Regulation to Functional Gene Sets. IJCBS 2009: 122-125

Hung-I Harry Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen: A probe-density-based analysis method for array CGH data: simulation, normalization and centralization. Bioinformatics 24(16): 1749-1756 (2008)

Hung-I Harry Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S. Meltzer, Eric Y. Chuang, Yidong Chen: A probe-density-based analysis method for array CGH data: simulation, normalization and centralization. Bioinformatics 24(19): 2276 (2008)

Yuelin Zhu, Sean R. Davis, Robert M. Stephens, Paul S. Meltzer, Yidong Chen: GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus. Bioinformatics 24(23): 2798-2800 (2008)

Xu-Ling Zheng, Changle Zhou, Xiaodong Shi, Tangqiu Li, Yidong Chen: Automatic Acquisition of Phrase Semantic Rule for Chinese. AIRS 2008: 543-548

Xiaodong Shi, Yidong Chen, Jianfeng Jia: Dependency-Based Chinese-English Statistical Machine Translation. CICLing 2007: 385-396

Yidong Chen, Xiaodong Shi, Changle Zhou, Tangqiu Li, Qingyang Hong: Translation Memory Sharing Models in XMCAT. CSCWD 2007: 80-83

Jianping Hua, Yoganand Balagurunathan, Yidong Chen, James Lowey, Michael L. Bittner, Zixiang Xiong, Edward Suh, Edward R. Dougherty: Normalization Benefits Microarray-Based Classification. EURASIP J. Bioinformatics and Systems Biology 2006 (2006)

Edward R. Dougherty, Jianping Hua, Zixiang Xiong, Yidong Chen: Optimal robust classifiers. Pattern Recognition 38(10): 1520-1532 (2005)

Sanju Attoor, Edward R. Dougherty, Yidong Chen, Michael L. Bittner, Jeffrey M. Trent: Which is better for cDNA-microarray-based classification: ratios or direct intensities. Bioinformatics 20(16): 2513-2520 (2004)

Xiaodong Wang, Edward R. Dougherty, Yidong Chen, Carsten O. Peterson: Editorial. EURASIP J. Adv. Sig. Proc. 2004(1): 3-4 (2004)

Xiongwu Wu, Yidong Chen, Bernard R. Brooks, Yan A. Su: The Local Maximum Clustering Method and Its Application in Microarray Gene Expression Data Analysis. EURASIP J. Adv. Sig. Proc. 2004(1): 53-63 (2004)

Paul S. Meltzer, Sean R. Davis, Kristin Baird, Yidong Chen: Are We There Yet? Genomic Profiling and Mechanism in Cancer Research. CSB 2004: 6

Mattias Wahde, Gregory T. Klus, Michael L. Bittner, Yidong Chen, Zoltan Szallasi: Assessing the significance of consistently mis-regulated genes in cancer associated gene expression matrices. Bioinformatics 18(3): 389-394 (2002)

Yidong Chen, Vishnu G. Kamat, Edward R. Dougherty, Michael L. Bittner, Paul S. Meltzer, Jeffrey M. Trent: Ratio statistics of gene expression levels and applications to microarray data analysis. Bioinformatics 18(9): 1207-1215 (2002)

Edward R. Dougherty, Junior Barrera, Marcel Brun, Seungchan Kim, Roberto Marcondes Cesar Junior, Yidong Chen, Michael L. Bittner, Jeffrey M. Trent: Inference from Clustering with Application to Gene-Expression Microarrays. Journal of Computational Biology 9(1): 105-126 (2002)

Seungchan Kim, Edward R. Dougherty, Junior Barrera, Yidong Chen, Michael L. Bittner, Jeffrey M. Trent: Strong Feature Sets from Small Samples. Journal of Computational Biology 9(1): 127-146 (2002)

Shaozi Li, Tangqiu Li, Yidong Chen: IP Multicasting Technique and its Application on Multimedia Network Teaching System. CSCWD 2002: 61-64

Abdelghani Bellaachia, David Portnoy, Yidong Chen, Abdel. G. Elkahloun: E-CAST: A Data Mining Algorithm for Gene Expression Data. BIOKDD 2002: 49-54

Edward R. Dougherty, Yidong Chen: Robust optimal granulometric bandpass filters. Signal Processing 81(7): 1357-1372 (2001)

Edward R. Dougherty, Seungchan Kim, Yidong Chen: Coefficient of determination in nonlinear signal processing. Signal Processing 80(10): 2219-2235 (2000)

Yidong Chen, Edward R. Dougherty: Markovian Analysis of Adaptive Reconstructive Multiparameter tau-Openings. Journal of Mathematical Imaging and Vision 10(3): 253-267 (1999)

Edward R. Dougherty, Michael L. Bittner, Yidong Chen, Seungchan Kim, Krishnamoorthy Sivakumar, Junior Barrera, Paul S. Meltzer, Jeffrey M. Trent: Nonlinear filters in genomic control. NSIP 1999: 10-14

Yidong Chen, Edward R. Dougherty: Optimal and adaptive reconstructive granulometric bandpass filters. Signal Processing 61(1): 65-81 (1997)

Yidong Chen, Edward R. Dougherty: Adaptive reconstructive tau-openings: convergence and the steady-state distribution. J. Electronic Imaging 5(3): 266-282 (1996)

Edward R. Dougherty, Yidong Chen, Amir Waks: Bayesian morphological peak estimation and its application to chromosome counting via fluorescence In situ hybridization. Pattern Recognition 29(6): 987-996 (1996)