Christopher G. Chute

Stephen Tze-Inn Wu, Vinod Kaggal, Dmitriy Dligach, James J. Masanz, Pei Chen, Lee Becker, Wendy Webber Chapman, Guergana K. Savova, Hongfang Liu, Christopher G. Chute: A common type system for clinical natural language processing. J. Biomedical Semantics 4: 1 (2013)

Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute: Using Semantic Web technology to support icd-11 textual definitions authoring. J. Biomedical Semantics 4: 11 (2013)

Wei-Qi Wei, Cynthia L. Leibson, Jeanine E. Ransom, Abel N. Kho, Christopher G. Chute: The absence of longitudinal data limits the accuracy of high-throughput clinical phenotyping for identifying type 2 diabetes mellitus subjects. I. J. Medical Informatics 82(4): 239-247 (2013)

Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute: A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. JAMIA 20(3): 554-562 (2013)

Cui Tao, Jyotishman Pathak, Harold R. Solbrig, Wei-Qi Wei, Christopher G. Chute: Terminology representation guidelines for biomedical ontologies in the semantic web notations. Journal of Biomedical Informatics 46(1): 128-138 (2013)

Qian Zhu, Robert R. Freimuth, Zonghui Lian, Scott Bauer, Jyotishman Pathak, Cui Tao, Matthew J. Durski, Christopher G. Chute: Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study. Journal of Biomedical Informatics 46(2): 286-293 (2013)

Jyotishman Pathak, Richard C. Kiefer, Suzette J. Bielinski, Christopher G. Chute: Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank. J. Biomedical Semantics 3: 10 (2012)

Cui Tao, Yongqun He, Hannah Yang, Poland A. Gregory, Christopher G. Chute: Ontology-based time information representation of vaccine adverse events in VAERS for temporal analysis. J. Biomedical Semantics 3: 13 (2012)

Qian Zhu, Guoqian Jiang, Christopher G. Chute: Profiling structured product labeling with NDF-RT and RxNorm. J. Biomedical Semantics 3: 16 (2012)

Mark A. Musen, Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne D. Storey, Barry Smith: The National Center for Biomedical Ontology. JAMIA 19(2): 190-195 (2012)

Abel N. Kho, M. Geoffrey Hayes, Laura Rasmussen-Torvik, Jennifer A. Pacheco, William K. Thompson, Loren L. Armstrong, Joshua C. Denny, Peggy L. Peissig, Aaron W. Miller, Wei-Qi Wei, Suzette J. Bielinski, Christopher G. Chute, Cynthia L. Leibson, Gail P. Jarvik, David R. Crosslin, Christopher S. Carlson, Katherine M. Newton, Wendy A. Wolf, Rex L. Chisholm, William L. Lowe: Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. JAMIA 19(2): 212-218 (2012)

Wei-Qi Wei, Cynthia L. Leibson, Jeanine E. Ransom, Abel N. Kho, Pedro J. Caraballo, High Seng Chai, Barbara P. Yawn, Jennifer A. Pacheco, Christopher G. Chute: Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus. JAMIA 19(2): 219-224 (2012)

Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute: Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups. JAMIA 19(e1) (2012)

Guergana K. Savova, Janet E. Olson, Sean P. Murphy, Victoria L. Cafourek, Fergus J. Couch, Matthew P. Goetz, James N. Ingle, Vera J. Suman, Christopher G. Chute, Richard M. Weinshilboum: Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record. JAMIA 19(e1) (2012)

Stephen Tze-Inn Wu, Hongfang Liu, Dingcheng Li, Cui Tao, Mark A. Musen, Christopher G. Chute, Nigam H. Shah: Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. JAMIA 19(e1) (2012)

Himali Saitwal, David Qing, Stephen Jones, Elmer V. Bernstam, Christopher G. Chute, Todd R. Johnson: Cross-terminology mapping challenges: A demonstration using medication terminological systems. Journal of Biomedical Informatics 45(4): 613-625 (2012)

Susan Rea, Jyotishman Pathak, Guergana K. Savova, Thomas A. Oniki, Les Westberg, Calvin E. Beebe, Cui Tao, Craig G. Parker, Peter J. Haug, Stanley M. Huff, Christopher G. Chute: Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project. Journal of Biomedical Informatics 45(4): 763-771 (2012)

Himali Saitwal, David Qing, Stephen Jones, Elmer V. Bernstam, Christopher G. Chute, Todd R. Johnson: Erratum to "Cross-terminology mapping challenges: A demonstration using medication terminological systems" [J. Biomed. Inform. (2012) 613-625]. Journal of Biomedical Informatics 45(6): 1217 (2012)

Christopher G. Chute: (1) Obstacles and options for big-data applications in biomedicine: The role of standards and normalizations. BIBM 2012: 1

Dingcheng Li, Cui Tao, Hongfang Liu, Christopher G. Chute: Ontology-Based Temporal Relation Modeling with MapReduce Latent Dirichlet Allocations for Big EHR Data. CGC 2012: 708-715

Guoqian Jiang, Julie Evans, Thomas A. Oniki, Joey Coyle, Landen Bain, Stanley M. Huff, Rebecca Kush, Christopher G. Chute: Harmonization of detailed clinical models with clinical study data standard. MIX-HS 2012: 23-30

Hongfang Liu, Stephen Tze-Inn Wu, Cui Tao, Christopher G. Chute: Modeling UIMA type system using web ontology language: towards interoperability among UIMA-based NLP tools. MIX-HS 2012: 31-36

Cui Tao, Yuji Zhang, Guoqian Jiang, Matt-Mouley Bouamrane, Christopher G. Chute: Optimizing semantic MEDLINE for translational science studies using semantic web technologies. MIX-HS 2012: 53-58

Sunghwan Sohn, Sean P. Murphy, Siddhartha Jonnalagadda, Kavishwar Wagholikar, Stephen Tze-Inn Wu, Christopher G. Chute, Hongfang Liu, Scott Halgrim: Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes. HISB 2012: 118

Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute: A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data. HISB 2012: 133

Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute: Applying linked data principles to represent patient's electronic health records at Mayo clinic: a case report. IHI 2012: 455-464

Cui Tao, Krist Wongsuphasawat, Kimberly Clark, Catherine Plaisant, Ben Shneiderman, Christopher G. Chute: Towards event sequence representation, reasoning and visualization for EHR data. IHI 2012: 801-806

Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute: Building Standardized Semantic Web RESTful Services to Support ICD-11 Revision. SWAT4LS 2012

Jyotishman Pathak, Christopher G. Chute: Letter: Further revamping VA's NDF-RT drug terminology for clinical research. JAMIA 18(3): 347-348 (2011)

Jyotishman Pathak, Janey Wang, Sudha Kashyap, Melissa A. Basford, Rongling Li, Daniel R. Masys, Christopher G. Chute: Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience. JAMIA 18(4): 376-386 (2011)

Sunghwan Sohn, Jean-Pierre Kocher, Christopher G. Chute, Guergana K. Savova: Drug side effect extraction from clinical narratives of psychiatry and psychology patients. JAMIA 18(Supplement): 144-149 (2011)

Serguei V. S. Pakhomov, Ted Pedersen, Bridget T. McInnes, Genevieve B. Melton, Alexander Ruggieri, Christopher G. Chute: Towards a framework for developing semantic relatedness reference standards. Journal of Biomedical Informatics 44(2): 251-265 (2011)

Cui Tao, Natalya Fridman Noy, Harold R. Solbrig, Nigam H. Shah, Mark A. Musen, Christopher G. Chute: Proposed SKOS Extensions for BioPortal Terminology Services. JIST 2011: 342-349

Guoqian Jiang, Jon D. Duke, Jyotishman Pathak, Christopher G. Chute: An Ontological Representation of Adverse Drug Events. ICBO 2011

Guoqian Jiang, Harold R. Solbrig, Robert J. G. Chalmers, Kent A. Spackman, Alan L. Rector, Christopher G. Chute: A Case Study of ICD-11 Anatomy Value Set Extraction from SNOMED CT. ICBO 2011

Jyotishman Pathak, Shawn P. Murphy, Brian N. Willaert, Hilal M. Kremers, Christopher G. Chute, Barbara P. Yawn, Walter A. Rocca: Using RxNorm to Extract Medication Data from Electronic Health Records in the Rochester Epidemiology Project. ICBO 2011

Cui Tao, Guoqian Jiang, Kimberly Clark, Deepak K. Sharma, Christopher G. Chute: Toward Answering Time-Related Questions from Adverse Event Reports Using Ontology-Based Approaches. ICBO 2011

Patricia L. Whetzel, Natasha F. Noy, Nigam Shah, Paul R. Alexander, Michael Dorf, Ray W. Fergerson, Margaret-Anne D. Storey, Barry Smith, Christopher G. Chute, Mark A. Musen: Bioportal: Ontologies and Integrated Data Resources at the Click of a Mouse. ICBO 2011

Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute: Using semantic web technology to support ICD-11 textual definitions authoring. SWAT4LS 2011: 38-44

Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute: The linked clinical data project: applying semantic web technologies for clinical and translational research using electronic medical records. SWAT4LS 2011: 94-95

Christopher G. Chute, Scott A. Beck, Thomas B. Fisk, David N. Mohr: The Enterprise Data Trust at Mayo Clinic: a semantically integrated warehouse of biomedical data. JAMIA 17(2): 131-135 (2010)

Jyotishman Pathak, Christopher G. Chute: Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT. JAMIA 17(4): 432-439 (2010)

Guergana K. Savova, James J. Masanz, Philip V. Ogren, Jiaping Zheng, Sunghwan Sohn, Karin Kipper Schuler, Christopher G. Chute: Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. JAMIA 17(5): 507-513 (2010)

Iftikhar J. Kullo, Jin Fan, Jyotishman Pathak, Guergana K. Savova, Zeenat Ali, Christopher G. Chute: Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. JAMIA 17(5): 568-574 (2010)

Jyotishman Pathak, Lee B. Peters, Christopher G. Chute, Olivier Bodenreider: Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG. JAMIA 17(6): 714-719 (2010)

Jonathan S. Schildcrout, Melissa A. Basford, Jill M. Pulley, Daniel R. Masys, Dan M. Roden, Deede Wang, Christopher G. Chute, Iftikhar J. Kullo, David Carrell, Peggy L. Peissig, Abel N. Kho, Joshua C. Denny: An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. Journal of Biomedical Informatics 43(6): 914-923 (2010)

Cui Tao, Harold R. Solbrig, Deepak K. Sharma, Wei-Qi Wei, Guergana K. Savova, Christopher G. Chute: Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques. International Semantic Web Conference (2) 2010: 241-256

Guoqian Jiang, Christopher G. Chute: Viewpoint Paper: Auditing the Semantic Completeness of SNOMED CT Using Formal Concept Analysis. JAMIA 16(1): 89-102 (2009)

Jyotishman Pathak, Harold R. Solbrig, James D. Buntrock, Thomas M. Johnson, Christopher G. Chute: Implementation Brief: LexGrid: A Framework for Representing, Storing, and Querying Biomedical Terminologies from Simple to Sublime. JAMIA 16(3): 305-315 (2009)

Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute: Formalizing ICD coding rules using Formal Concept Analysis. Journal of Biomedical Informatics 42(3): 504-517 (2009)

Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Daniel L. Rubin, Margaret-Anne D. Storey, Christopher G. Chute, Mark A. Musen: BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research 37(Web-Server-Issue): 170-173 (2009)

Guergana K. Savova, Philip V. Ogren, Patrick H. Duffy, James D. Buntrock, Christopher G. Chute: Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification. JAMIA 15(1): 25-28 (2008)

Christopher G. Chute: Editorial Comments: Biosurveillance, Classification, and Semantic Health Technologies. JAMIA 15(2): 172-173 (2008)

Guergana K. Savova, Anni Coden, Igor L. Sominsky, Rie Johnson, Philip V. Ogren, Piet C. de Groen, Christopher G. Chute: Word sense disambiguation across two domains: Biomedical literature and clinical notes. Journal of Biomedical Informatics 41(6): 1088-1100 (2008)

Jyotishman Pathak, James D. Buntrock, Christopher G. Chute: LexSearch: An Approach for Leveraging Semantic Annotations to Searching Ontologies. AAAI Spring Symposium: Semantic Scientific Knowledge Integration 2008: 68-73

Jyotishman Pathak, Thomas M. Johnson, Christopher G. Chute: Modular ontology techniques and their applications in the biomedical domain. IRI 2008: 351-356

Guoqian Jiang, Christopher G. Chute: Comparing the Effects of Two Semantic Terminology Models on Classification of Clinical Notes: A Study of Heart Murmur Findings. KR-MED 2008

Philip V. Ogren, Guergana K. Savova, Christopher G. Chute: Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition. LREC 2008

Jyotishman Pathak, Guoqian Jiang, Sridhar O. Dwarkanath, James D. Buntrock, Christopher G. Chute: Adopting Graph Traversal Techniques for Context-Driven Value Sets Extraction from Biomedical Knowledge Sources. ICSC 2008: 460-467

Ted Pedersen, Serguei V. S. Pakhomov, Siddharth Patwardhan, Christopher G. Chute: Measures of semantic similarity and relatedness in the biomedical domain. Journal of Biomedical Informatics 40(3): 288-299 (2007)

Serguei V. S. Pakhomov, Anni Coden, Christopher G. Chute: Developing a corpus of clinical notes manually annotated for part-of-speech. I. J. Medical Informatics 75(6): 418-429 (2006)

Serguei V. S. Pakhomov, James D. Buntrock, Christopher G. Chute: Research Paper: Automating the Assignment of Diagnosis Codes to Patient Encounters Using Example-based and Machine Learning Techniques. JAMIA 13(5): 516-525 (2006)

Mahesh Joshi, Serguei V. S. Pakhomov, Ted Pedersen, Richard Maclin, Christopher G. Chute: An End-to-End Supervised Target-Word Sense Disambiguation System. AAAI 2006: 1941-1942

Sergey V. Pakhomov, James D. Buntrock, Christopher G. Chute: Prospective recruitment of patients with congestive heart failure using an ad-hoc binary classifier. Journal of Biomedical Informatics 38(2): 145-153 (2005)

Anni Coden, Sergey V. Pakhomov, Rie Kubota Ando, Patrick H. Duffy, Christopher G. Chute: Domain-specific language models and lexicons for tagging. Journal of Biomedical Informatics 38(6): 422-430 (2005)

Marcelline R. Harris, Guergana K. Savova, Thomas M. Johnson, Christopher G. Chute: A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept. Journal of Biomedical Informatics 36(4-5): 250-259 (2003)

Christopher G. Chute: Viewpoint: Clinical Classification and Terminology: Some History and Current Observations. JAMIA 7(3): 298-303 (2000)

Marcelline R. Harris, Judith R. Graves, Harold R. Solbrig, Peter L. Elkin, Christopher G. Chute: Review: Embedded Structures and Representation of Nursing Knowledge. JAMIA 7(6): 539-549 (2000)

Christopher G. Chute, Simon P. Cohn, James R. Campbell: Position Paper: A Framework for Comprehensive Health Terminology Systems in the United States: Development Guidelines, Criteria for Selection, and Public Policy Implications. JAMIA 5(6): 503-510 (1998)

James R. Campbell, Paul Carpenter, Charles Sneiderman, Simon P. Cohn, Christopher G. Chute, Judith Warren: Research Paper: Phase II Evaluation of Clinical Coding Schemes: Completeness, Taxonomy, Mapping, Definitions, and Clarity. JAMIA 4(3): 238-251 (1997)

Yiming Yang, Christopher G. Chute: An Example-Based Mapping Method for Text Categorization and Retrieval. ACM Trans. Inf. Syst. 12(3): 252-277 (1994)

Yiming Yang, Christopher G. Chute, Georey E. Atkin, Andrew Anda: TREC-3 Retrieval Evaluation Using Expert Network. TREC 1994: 0-

Yiming Yang, Christopher G. Chute: An Application of Least Squares Fit Mapping to Text Information Retrieval. SIGIR 1993: 281-290

Yiming Yang, Christopher G. Chute: A Linear Least Squares Fit Mapping Method For Information Retrieval From Natural Language Texts. COLING 1992: 447-453