Melissa S. Cline

Laurence R. Meyer, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Robert M. Kuhn, Matthew C. Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Venkat S. Malladi, Chin H. Li, Brian T. Lee, Katrina Learned, Vanessa Kirkup, Fan Hsu, Steven G. Heitner, Rachel A. Harte, Maximilian Haeussler, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Timothy R. Dreszer, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent: The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Research 41(Database-Issue): 64-69 (2013)

Mary Goldman, Brian Craft, Teresa Swatloski, Kyle Ellrott, Melissa S. Cline, Mark Diekhans, Singer Ma, Chris Wilks, Joshua M. Stuart, David Haussler, Jingchun Zhu: The UCSC Cancer Genomics Browser: update 2013. Nucleic Acids Research 41(Database-Issue): 949-954 (2013)

Kate R. Rosenbloom, Timothy R. Dreszer, Jeffrey C. Long, Venkat S. Malladi, Cricket A. Sloan, Brian J. Raney, Melissa S. Cline, Donna Karolchik, Galt P. Barber, Hiram Clawson, Mark Diekhans, Pauline A. Fujita, Mary Goldman, Robert C. Gravell, Rachel A. Harte, Angie S. Hinrichs, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Morgan Maddren, Laurence R. Meyer, Andy Pohl, Brooke L. Rhead, Matthew C. Wong, Ann S. Zweig, David Haussler, W. James Kent: ENCODE whole-genome data in the UCSC Genome Browser: update 2012. Nucleic Acids Research 40(Database-Issue): 912-917 (2012)

Timothy R. Dreszer, Donna Karolchik, Ann S. Zweig, Angie S. Hinrichs, Brian J. Raney, Robert M. Kuhn, Laurence R. Meyer, Matthew C. Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Andy Pohl, Venkat S. Malladi, Chin H. Li, Katrina Learned, Vanessa Kirkup, Fan Hsu, Rachel A. Harte, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent: The UCSC Genome Browser database: extensions and updates 2011. Nucleic Acids Research 40(Database-Issue): 918-923 (2012)

Melissa S. Cline, Rachel Karchin: Using bioinformatics to predict the functional impact of SNVs. Bioinformatics 27(4): 441-448 (2011)

Brian J. Raney, Melissa S. Cline, Kate R. Rosenbloom, Timothy R. Dreszer, Katrina Learned, Galt P. Barber, Laurence R. Meyer, Cricket A. Sloan, Venkat S. Malladi, Krishna M. Roskin, Bernard B. Suh, Angie S. Hinrichs, Hiram Clawson, Ann S. Zweig, Vanessa Kirkup, Pauline A. Fujita, Brooke L. Rhead, Kayla E. Smith, Andy Pohl, Robert M. Kuhn, Donna Karolchik, David Haussler, W. James Kent: ENCODE whole-genome data in the UCSC genome browser (2011 update). Nucleic Acids Research 39(Database-Issue): 871-875 (2011)

Pauline A. Fujita, Brooke L. Rhead, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Melissa S. Cline, Mary Goldman, Galt P. Barber, Hiram Clawson, Antonio Coelho, Mark Diekhans, Timothy R. Dreszer, Belinda Giardine, Rachel A. Harte, Jennifer Hillman-Jackson, Fan Hsu, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Chin H. Li, Laurence R. Meyer, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Kayla E. Smith, David Haussler, W. James Kent: The UCSC Genome Browser database: update 2011. Nucleic Acids Research 39(Database-Issue): 876-882 (2011)

Andrew A. Pohl, Charles W. Sugnet, Tyson Clark, Kayla E. Smith, Pauline A. Fujita, Melissa S. Cline: Affy exon tissues: exon levels in normal tissues in human, mouse and rat. Bioinformatics 25(18): 2442-2443 (2009)

Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht: Integrating expression data with domain interaction networks. Bioinformatics 24(21): 2546-2548 (2008)

Dorothea Emig, Melissa S. Cline, Karsten Klein, Anne Kunert, Petra Mutzel, Thomas Lengauer, Mario Albrecht: Integrative Visual Analysis of the Effects of Alternative Splicing on Protein Domain Interaction Networks. J. Integrative Bioinformatics 5(2) (2008)

Olivier Garcia, Cosmin Saveanu, Melissa S. Cline, Micheline Fromont-Racine, Alain Jacquier, Benno Schwikowski, Tero Aittokallio: GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. Bioinformatics 23(3): 394-396 (2007)

Charles W. Sugnet, Karpagam Srinivasan, Tyson Clark, Georgeann O'Brien, Melissa S. Cline, Hui Wang, Alan Williams, David Kulp, John Blume, David Haussler, Manuel Ares: Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays. PLoS Computational Biology 2(1) (2006)

Ron Shigeta, Melissa S. Cline, Guoying Liu, Michael A. Siani-Rose: GPCR-GRAPA-LIB-a refined library of hidden Markov Models for annotating GPCRs. Bioinformatics 19(5): 667-668 (2003)

Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose: Exploring Alternative Transcript Structure in the Humangenome Using Blocks and Interpro. J. Bioinformatics and Computational Biology 1(2): 289-306 (2003)

Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Venu Valmeekam, Shaw Sun, David Kulp, Michael A. Siani-Rose: NetAffx: Affymetrix probesets and annotations. Nucleic Acids Research 31(1): 82-86 (2003)

Melissa S. Cline, Richard Hughey, Kevin Karplus: Predicting reliable regions in protein sequence alignments. Bioinformatics 18(2): 306-314 (2002)