Jonathan Crabtree

David R. Riley, Samuel V. Angiuoli, Jonathan Crabtree, Julie C. Dunning Hotopp, Herve Tettelin: Using Sybil for interactive comparative genomics of microbes on the web. Bioinformatics 28(2): 160-166 (2012)

Martha B. Arnaud, Gustavo C. Cerqueira, Diane O. Inglis, Marek S. Skrzypek, Jonathan Binkley, Marcus C. Chibucos, Jonathan Crabtree, Clinton Howarth, Joshua Orvis, Prachi Shah, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock, Jennifer R. Wortman: The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources. Nucleic Acids Research 40(Database-Issue): 653-659 (2012)

Joshua Orvis, Jonathan Crabtree, Kevin Galens, Aaron Gussman, Jason M. Inman, Eduardo Lee, Sreenath Nampally, David R. Riley, Jaideep P. Sundaram, Victor Felix, Brett Whitty, Anup Mahurkar, Jennifer R. Wortman, Owen White, Samuel V. Angiuoli: Ergatis: a web interface and scalable software system for bioinformatics workflows. Bioinformatics 26(12): 1488-1492 (2010)

Lauren M. Brinkac, Tanja Davidsen, Erin Beck, Anuradha Ganapathy, Elisabet Caler, Robert J. Dodson, A. Scott Durkin, Derek M. Harkins, Hernan Lorenzi, Ramana Madupu, Yinong Sebastian, Susmita Shrivastava, Mathangi Thiagarajan, Joshua Orvis, Jaideep P. Sundaram, Jonathan Crabtree, Kevin Galens, Yongmei Zhao, Jason M. Inman, Robert Montgomery, Seth Schobel, Kevin Galinsky, David M. Tanenbaum, Adam Resnick, Nikhat Zafar, Owen White, Granger G. Sutton: Pathema: a clade-specific bioinformatics resource center for pathogen research. Nucleic Acids Research 38(Database-Issue): 408-414 (2010)

Martha B. Arnaud, Marcus C. Chibucos, Maria C. Costanzo, Jonathan Crabtree, Diane O. Inglis, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman, Gavin Sherlock: The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. Nucleic Acids Research 38(Database-Issue): 420-427 (2010)

Nelson Axelrod, Yuan Lin, Pauline C. Ng, Timothy B. Stockwell, Jonathan Crabtree, Jiaqi Huang, Ewen Kirkness, Robert Strausberg, Marvin Frazier, J. Craig Venter, Saul Kravitz, Samuel Levy: The HuRef Browser: a web resource for individual human genomics. Nucleic Acids Research 37(Database-Issue): 1018-1024 (2009)

Jewel H. Ward, Antoine de Torcy, Mason Chua, Jonathan Crabtree: Extracting and Ingesting DDI Metadata and Digital Objects from a Data Archive into the iRODS Extension of the NARA TPAP Using the OAI-PMH. eScience 2009: 185-192

Amy Egan, Anup Mahurkar, Jonathan Crabtree, Jonathan H. Badger, Jane M. Carlton, Joana C. Silva: IDEA: Interactive Display for Evolutionary Analyses. BMC Bioinformatics 9 (2008)

Jewel H. Ward, Jonathan Crabtree: Integrating ddi metadata into the nara transcontinental persistent archive prototype via the oai-pmh. JCDL 2008: 473

Jonathan Crabtree, David Sheaves: Evolution of a data archive. JCDL 2007: 478

Li Li, Jonathan Crabtree, Steve Fischer, Deborah F. Pinney, Christian J. Stoeckert Jr., L. David Sibley, David S. Roos: ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites. Nucleic Acids Research 32(Database-Issue): 326-328 (2004)

Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel: PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Research 31(1): 212-215 (2003)

Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.: PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Research 30(1): 87-90 (2002)

Christian J. Stoeckert Jr., Angel D. Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton: A relational schema for both array-based and SAGE gene expression experiments. Bioinformatics 17(4): 300-308 (2001)

Susan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.: K2/Kleisli and GUS: Experiments in integrated access to genomic data sources. IBM Systems Journal 40(2): 512-531 (2001)

Steve Fischer, Jonathan Crabtree, Brian P. Brunk, M. Gibson, G. Christian Overton: bioWidgets: data interaction components for genomics. Bioinformatics 15(10): 837-846 (1999)

John P. Granieri, Jonathan Crabtree, Norman I. Badler: Production and Playback of Human Figure Motion for Visual Simulation. ACM Trans. Model. Comput. Simul. 5(3): 222-241 (1995)

John P. Granieri, Welton Becket, Barry D. Reich, Jonathan Crabtree, Norman I. Badler: Behavioral Control for Real-Time Simulated Human Agents. SI3D 1995: 173-180

Kim B. Bruce, Jonathan Crabtree, Gerlad Kanapathy: An Operational Semantics for TOOPLE: A Statically-Typed Object-Oriented Programming Language. MFPS 1993: 603-626

Kim B. Bruce, Jonathan Crabtree, Thomas P. Murtagh, Robert van Gent, Allyn Dimock, Robert Muller: Safe and Decidable Type Checking in an Object-Oriented Language. OOPSLA 1993: 29-46