Daniel Dalevi

Sean D. Hooper, Daniel Dalevi, Amrita Pati, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides: Estimating DNA coverage and abundance in metagenomes using a gamma approximation. Bioinformatics 26(3): 295-301 (2010)

Erik Kristiansson, Philip Hugenholtz, Daniel Dalevi: ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. Bioinformatics 25(20): 2737-2738 (2009)

Daniel Dalevi, Niklas Eriksen: Expected gene-order distances and model selection in bacteria. Bioinformatics 24(11): 1332-1338 (2008)

Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides: IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Research 36(Database-Issue): 534-538 (2008)

Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz: Annotation of metagenome short reads using proxygenes. ECCB 2008: 7-13

Marija Cvijovic, Daniel Dalevi, Elizabeth Bilsland, Graham J. L. Kemp, Per Sunnerhagen: Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation. BMC Bioinformatics 8 (2007)

Daniel Dalevi, Todd Z. DeSantis, Jakob Fredslund, Gary L. Andersen, Victor M. Markowitz, Philip Hugenholtz: Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinformatics 8 (2007)

Daniel Dalevi, Devdatt P. Dubhashi, Malte Hermansson: Bayesian classifiers for detecting HGT using fixed and variable order markov models of genomic signatures. Bioinformatics 22(5): 517-522 (2006)

Daniel Dalevi, Devdatt P. Dubhashi: The Peres-Shields Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity. WABI 2005: 291-302

Jim Samuelsson, Daniel Dalevi, Fredrik Levander, Thorsteinn S. Rögnvaldsson: Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting. Bioinformatics 20(18): 3628-3635 (2004)