Dina Demner-Fushman

Kin Wah Fung, Chiang S. Jao, Dina Demner-Fushman: Extracting drug indication information from structured product labels using natural language processing. JAMIA 20(3): 482-488 (2013)

Daekeun You, Matthew S. Simpson, Sameer Antani, Dina Demner-Fushman, George R. Thoma: Annotating image ROIs with text descriptions for multimodal biomedical document retrieval. DRR 2013

Daekeun You, Matthew S. Simpson, Sameer Antani, Dina Demner-Fushman, George R. Thoma: A robust pointer segmentation in biomedical images toward building a visual ontology for biomedical article retrieval. DRR 2013

Tanja Bekhuis, Dina Demner-Fushman: Screening nonrandomized studies for medical systematic reviews: A comparative study of classifiers. Artificial Intelligence in Medicine 55(3): 197-207 (2012)

Swapna Abhyankar, Dina Demner-Fushman, Clement J. McDonald: Standardizing clinical laboratory data for secondary use. Journal of Biomedical Informatics 45(4): 642-650 (2012)

Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider: A mutation-centric approach to identifying pharmacogenomic relations in text. Journal of Biomedical Informatics 45(5): 835-841 (2012)

Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson: A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning. JCSE 6(2): 151-160 (2012)

Dina Demner-Fushman, Sameer Antani, Matthew S. Simpson, George R. Thoma: Design and Development of a Multimodal Biomedical Information Retrieval System. JCSE 6(2): 168-177 (2012)

Matthew S. Simpson, Dina Demner-Fushman: Biomedical Text Mining: A Survey of Recent Progress. Mining Text Data 2012: 465-517

Henning Müller, Alba Garcia Seco de Herrera, Jayashree Kalpathy-Cramer, Dina Demner-Fushman, Sameer Antani, Ivan Eggel: Overview of the ImageCLEF 2012 Medical Image Retrieval and Classification Tasks. CLEF (Online Working Notes/Labs/Workshop) 2012

Matthew S. Simpson, Daekeun You, Md. Mahmudur Rahman, Dina Demner-Fushman, Sameer Antani, George R. Thoma: ITI's Participation in the ImageCLEF 2012 Medical Retrieval and Classification Tasks. CLEF (Online Working Notes/Labs/Workshop) 2012

Dina Demner-Fushman, Swapna Abhyankar: Syntactic-Semantic Frames for Clinical Cohort Identification Queries. DILS 2012: 100-112

Md. Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer Antani, Dina Demner-Fushman, George R. Thoma: An Interactive Image Retrieval Framework for Biomedical Articles Based on Visual Region-of- Interest (ROI) Identification and Classification. HISB 2012: 50

Antonio Jimeno-Yepes, James G. Mork, BartBomiej Wilkowski, Dina Demner-Fushman, Alan R. Aronson: MEDLINE MeSH indexing: lessons learned from machine learning and future directions. IHI 2012: 737-742

R. Joe Stanley, Soumya De, Dina Demner-Fushman, Sameer Antani, George R. Thoma: An image feature-based approach to automatically find images for application to clinical decision support. Comp. Med. Imag. and Graph. 35(5): 365-372 (2011)

Emilia Apostolova, Noriko Tomuro, Dina Demner-Fushman: Automatic Extraction of Lexico-Syntactic Patterns for Detection of Negation and Speculation Scopes. ACL (Short Papers) 2011: 283-287

Matthew S. Simpson, Md. Mahmudur Rahman, Srinivas Phadnis, Emilia Apostolova, Dina Demner-Fushman, Sameer Antani, George R. Thoma: Text and Content-based Approaches to Image Modality Classification and Retrieval for the ImageCLEF 2011 Medical Retrieval Track. CLEF (Notebook Papers/Labs/Workshop) 2011

Daekeun You, Sameer Antani, Dina Demner-Fushman, Md. Mahmudur Rahman, Venu Govindaraju, George R. Thoma: Automatic identification of ROI in figure images toward improving hybrid (text and image) biomedical document retrieval. DRR 2011: 1-10

Daekeun You, Sameer Antani, Dina Demner-Fushman, Venu Govindaraju, George R. Thoma: Detecting Figure-Panel Labels in Medical Journal Articles Using MRF. ICDAR 2011: 967-971

Md. Mahmudur Rahman, Sameer Antani, Dina Demner-Fushman, George R. Thoma: Biomedical Image Retrieval Using Multimodal Context and Concept Feature Spaces. MCBR-CDS 2011: 24-35

Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, Bastien Rance, François-Michel Lang, Nicholas C. Ide, Emilia Apostolova, Alan R. Aronson: A Knowledge-Based Approach to Medical Records Retrieval. TREC 2011

James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang, Zhiyong Lu, Aurélie Névéol, Lee B. Peters, Sonya E. Shooshan, Alan R. Aronson: Extracting Rx information from clinical narrative. JAMIA 17(5): 536-539 (2010)

Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson: UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. Journal of Biomedical Informatics 43(4): 587-594 (2010)

George R. Thoma, Glenn Ford, Sameer Antani, Dina Demner-Fushman, Michael Chung, Matthew S. Simpson: Interactive publication: The document as a research tool. J. Web Sem. 8(2-3): 145-150 (2010)

Matthew S. Simpson, Md. Mahmudur Rahman, Sachin Singhal, Dina Demner-Fushman, Sameer Antani, George R. Thoma: Text- and Content-based Approaches to Image Modality Detection and Retrieval for the ImageCLEF 2010 Medical Retrieval Track. CLEF (Notebook Papers/LABs/Workshops) 2010

Daekeun You, Sameer Antani, Dina Demner-Fushman, Md. Mahmudur Rahman, Venu Govindaraju, George R. Thoma: Biomedical article retrieval using multimodal features and image annotations in region-based CBIR. DRR 2010: 1-10

Emilia Apostolova, Noriko Tomuro, Dina Demner-Fushman: Identifying contextual information in clinical texts: a study of two domains. Semantic Mining in Biomedicine 2010

Casey Lynnette Overby, Peter Tarczy-Hornoch, Dina Demner-Fushman: The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers. BMC Bioinformatics 10(S-9): 8 (2009)

Dina Demner-Fushman, Sameer Antani, Matthew S. Simpson, George R. Thoma: Annotation and retrieval of clinically relevant images. I. J. Medical Informatics 78(12): 59-67 (2009)

Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, R. Brian Haynes: Viewpoint Paper: Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence. JAMIA 16(1): 25-31 (2009)

Dina Demner-Fushman, Wendy Webber Chapman, Clement J. McDonald: What can natural language processing do for clinical decision support? Journal of Biomedical Informatics 42(5): 760-772 (2009)

Marcelo Fiszman, Dina Demner-Fushman, Halil Kilicoglu, Thomas C. Rindflesch: Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation. Journal of Biomedical Informatics 42(5): 801-813 (2009)

Daekeun You, Emilia Apostolova, Sameer Antani, Dina Demner-Fushman, George R. Thoma: Figure content analysis for improved biomedical article retrieval. DRR 2009: 1-10

Matthew S. Simpson, Dina Demner-Fushman, Charles Sneiderman, Sameer Antani, George R. Thoma: Using Non-Lexical Features to Identify Effective Indexing Terms for Biomedical Illustrations. EACL 2009: 737-744

Md. Mahmudur Rahman, Sameer Antani, L. Rodney Long, Dina Demner-Fushman, George R. Thoma: Multi-modal Query Expansion Based on Local Analysis for Medical Image Retrieval. MCBR-CDS 2009: 110-119

Emilia Apostolova, Dina Demner-Fushman: Towards Automatic Image Region Annotation - Image Region Textual Coreference Resolution. HLT-NAACL (Short Papers) 2009: 41-44

Dina Demner-Fushman, Sophia Ananiadou, K. Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber: Themes in biomedical natural language processing: BioNLP08. BMC Bioinformatics 9(S-11) (2008)

Sameer Antani, Dina Demner-Fushman, Jiang Li, Balaji Vasan Srinivasan, George R. Thoma: Exploring use of images in clinical articles for decision support in evidence-based medicine. DRR 2008: 68150

Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin B. Cohen: Frontiers of biomedical text mining: current progress. Briefings in Bioinformatics 8(5): 358-375 (2007)

Dina Demner-Fushman, Jimmy J. Lin: Answering Clinical Questions with Knowledge-Based and Statistical Techniques. Computational Linguistics 33(1): 63-103 (2007)

Nicholas C. Ide, Russell F. Loane, Dina Demner-Fushman: Application of Information Technology: Essie: A Concept-based Search Engine for Structured Biomedical Text. JAMIA 14(3): 253-263 (2007)

Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Nicholas C. Ide, Thomas C. Rindflesch: Research Paper: Knowledge-based Methods to Help Clinicians Find Answers in MEDLINE. JAMIA 14(6): 772-780 (2007)

Susan E. Hauser, Dina Demner-Fushman, Joshua L. Jacobs, Susanne M. Humphrey, Glenn Ford, George R. Thoma: Research Paper: Using Wireless Handheld Computers to Seek Information at the Point of Care: An Evaluation by Clinicians. JAMIA 14(6): 807-815 (2007)

Dina Demner-Fushman, Sameer Antani, Mohammad-Reza Siadat, Hamid Soltanian-Zadeh, Farshad Fotouhi, Kost V. Elisevich: Automatically Finding Images for Clinical Decision Support. ICDM Workshops 2007: 139-144

Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, K. Bretonnel Cohen: Session Introduction. Pacific Symposium on Biocomputing 2007: 205-208

Caroline B. Ahlers, Marcelo Fiszman, Dina Demner-Fushman, François-Michel Lang, Thomas C. Rindflesch: Extracting Semantic Predications from Medline Citations for Pharmacogenomics. Pacific Symposium on Biocomputing 2007: 209-220

Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson: Combining Resources to Find Answers to Biomedical Questions. TREC 2007

Jimmy J. Lin, Dina Demner-Fushman: Methods for automatically evaluating answers to complex questions. Inf. Retr. 9(5): 565-587 (2006)

Dina Demner-Fushman, Barbara Few, Susan E. Hauser, George R. Thoma: Research Paper: Automatically Identifying Health Outcome Information in MEDLINE Records. JAMIA 13(1): 52-60 (2006)

Susanne M. Humphrey, Willie J. Rogers, Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch: Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment. JASIST 57(1): 96-113 (2006)

Dina Demner-Fushman, Jimmy J. Lin: Answer Extraction, Semantic Clustering, and Extractive Summarization for Clinical Question Answering. ACL 2006

Jimmy J. Lin, Dina Demner-Fushman: Will Pyramids Built of Nuggets Topple Over?. HLT-NAACL 2006

Jimmy J. Lin, Dina Demner-Fushman: The role of knowledge in conceptual retrieval: a study in the domain of clinical medicine. SIGIR 2006: 99-106

Jimmy J. Lin, Philip Wu, Dina Demner-Fushman, Eileen G. Abels: Exploring the limits of single-iteration clarification dialogs. SIGIR 2006: 469-476

Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Alan R. Aronson: Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. TREC 2006

Jimmy J. Lin, Dina Demner-Fushman: Automatically Evaluating Answers to Definition Questions. HLT/EMNLP 2005

Alan R. Aronson, Dina Demner-Fushman, Susanne M. Humphrey, Jimmy J. Lin, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Hongfang Liu: Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents. TREC 2005

Jimmy J. Lin, Eileen G. Abels, Dina Demner-Fushman, Douglas W. Oard, Philip Wu, Yejun Wu: A Menagerie of Tracks at Maryland: HARD, Enterprise, QA, and Genomics, Oh My! TREC 2005

Susan E. Hauser, Dina Demner-Fushman, Glenn Ford, George R. Thoma: A Testbed System for Mobile Point-of-Care Information Delivery. CBMS 2004: 147-152

Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell R. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu: Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. TREC 2004

Daqing He, Dina Demner-Fushman, Douglas W. Oard, Damianos Karakos, Sanjeev Khudanpur: Improving Passage Retrieval Using Interactive Elicition and Statistical Modeling. TREC 2004

Daqing He, Douglas W. Oard, Jianqiang Wang, Jun Luo, Dina Demner-Fushman, Kareem Darwish, Philip Resnik, Sanjeev Khudanpur, Michael Nossal, Michael Subotin, Anton Leuski: Making MIRACLEs: Interactive translingual search for Cebuano and Hindi. ACM Trans. Asian Lang. Inf. Process. 2(3): 219-244 (2003)

Susan E. Hauser, Jonathan Schlaifer, Tehseen F. Sabir, Dina Demner-Fushman, Scott Straughan, George R. Thoma: Correcting OCR text by association with historical datasets. DRR 2003: 84-93

Dina Demner-Fushman, Douglas W. Oard: The Effect of Bilingual Term List Size on Dictionary-Based Cross-Language Information Retrieval. HICSS 2003: 108

Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Lorraine K. Tanabe, Lawrence H. Smith, Dina Demner-Fushman, Russell R. Loane, James G. Mork, Olivier Bodenreider: Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. TREC 2003: 441-450

Daqing He, Dina Demner-Fushman: HARD Experiment at Maryland: From Need Negotiation to Automated HARD Process. TREC 2003: 707-714

Douglas W. Oard, Dina Demner-Fushman, Jan Hajic, Bhuvana Ramabhadran, Samuel Gustman, William J. Byrne, Dagobert Soergel, Bonnie J. Dorr, Philip Resnik, Michael Picheny: Cross-Language Access to Recorded Speech in the MALACH Project. TSD 2002: 57-64