Youping Deng

Chao-Yang Pang, Gang Jiang, Shipeng Wang, Ben-Qiong Hu, Qingzhong Liu, Youping Deng, Xudong Huang: Gene order computation using Alzheimer's DNA microarray gene expression data and the ant colony optimisation algorithm. IJDMB 6(6): 617-632 (2012)

William Ford, Jin-Woo Park, Aaron S. Campbell, Youping Deng, Yan Li, Walker H. Land Jr.: Classifying Lung Cancer Recurrence Time Using Novel Ensemble Method with Gene Network based Input Models. Procedia CS 12: 444-449 (2012)

J. David Schaffer, Jin-Woo Park, Erin Barnes, Qiyi Lu, Xingye Qiao, Youping Deng, Yan Li, Walker H. Land Jr.: GRNN Ensemble Classifier for Lung Cancer Prognosis Using Only Demographic and TNM features. Procedia CS 12: 450-455 (2012)

Ke Zhang, Haiyan Wang, Arne C. Bathke, Solomon W. Harrar, Hans-Peter Piepho, Youping Deng: Gene set analysis for longitudinal gene expression data. BMC Bioinformatics 12: 273 (2011)

Zhengjun Fan, Yuan Gao, Zehao Jia, Youping Deng, Dequan Chen: Effects of cooling cornea by Low-Temperature Saline Washing on postoperative pain in Photorefractive Keratectomy. I. J. Functional Informatics and Personalised Medicine 3(3): 228-235 (2010)

Alexander Pozhikov, Mehdi Pirooznia, Rachel Ryan, Chaoyang Zhang, Ping Gong, Edward J. Perkins, Youping Deng, Marius Brouwer: Generation and Analysis of Expressed Sequence Tags from the Sheepshead Minnow (Cyprinodon Variegatus). BIOCOMP 2009: 174-180

Mehdi Pirooznia, Douglas Crawford, Jeffrey Vanwye, Russell Gibson, Chaoyang Zhang, Youping Deng, Timothy McLean: Genomic Resources for Karenia brevis. BIOCOMP 2009: 228-234

Jinghe Mao, Ming Shenwu, Marketta Blue, Manuel Ong, Mary Roth, Ruth Welti, Youping Deng: Plasma Lipidomic Profiling Reveals the Potential Biomarkers in Type 2 Diabetic Patients. BIOCOMP 2009: 774-779

Vijender Chaitankar, Chaoyang Zhang, Preetam Ghosh, Edward J. Perkins, Ping Gong, Youping Deng: Gene Regulatory Network Inference Using Predictive Minimum Description Length Principle and Conditional Mutual Information. IJCBS 2009: 487-490

Mehdi Pirooznia, Tanwir Habib, Edward J. Perkins, Youping Deng: GOfetcher: a database with complex searching facility for gene ontology. Bioinformatics 24(21): 2561-2563 (2008)

Arun Rawat, Georg J. Seifert, Youping Deng: Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data. BMC Bioinformatics 9(S-9) (2008)

Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng: Inferring Gene Regulatory Network of Yeast Cell-Cycle using Dynamic Bayesian Network. BIOCOMP 2008: 801-805

Mehdi Pirooznia, Ping Gong, Chaoyang Zhang, Edward J. Perkins, Youping Deng: Creating a Workflow for Expressed Sequence Tags Analysis. BIOCOMP 2008: 806-808

Ping Gong, Mehdi Pirooznia, Xin Guan, J. Cristobal Vera, Chun Liang, Youping Deng, Chaoyang Zhang, Edward J. Perkins: A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags. BIOCOMP 2008: 1040-1043

Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping Gong, Youping Deng: Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks. BMC Bioinformatics 8(S-7) (2007)

Mehdi Pirooznia, Ping Gong, Xin Guan, Laura S. Inouye, Kuan Yang, Edward J. Perkins, Youping Deng: Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida. BMC Bioinformatics 8(S-7) (2007)

Mehdi Pirooznia, Youping Deng: Efficiency of Hybrid Normalization of Microarray Gene Expression: A Simulation Study. AINA Workshops (1) 2007: 739-744

Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng: An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. BIBE 2007: 187-191

Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng: Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. BIBE 2007: 524-531

Chaoyang Zhang, Surender Dargan, Hong Lan, Youping Deng: Web-Based Information Retrieval with Local and Global Link Analyis. IKE 2007: 117-123

Arun Rajendran, Peng Li, Chaoyang Zhang, Youping Deng: Parallel Training of Multi-class Support Vector Machines Using Sequential Minimal Optimization. MLMTA 2007: 31-37

Vijayaraj Nagarajan, Navodit Kaushik, Beddhu Murali, Chaoyang Zhang, Sanyogita Lakhera, Mohamed O. Elasri, Youping Deng: A Fourier Transformation based Method to Mine Peptide Space for Antimicrobial Activity. BMC Bioinformatics 7(S-2) (2006)

Venkata Thodima, Mehdi Pirooznia, Youping Deng: RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers. BMC Bioinformatics 7(S-2) (2006)

Youping Deng, Jun Ni, Chaoyang Zhang: Development of computations in bioscience and bioinformatics and its application: review of the Symposium of Computations in Bioinformatics and Bioscience (SCBB06). BMC Bioinformatics 7(S-4) (2006)

Mehdi Pirooznia, Youping Deng: SVM Classifier - a comprehensive java interface for support vector machine classification of microarray data. BMC Bioinformatics 7(S-4) (2006)

Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri: Identification of new members of hydrophobin family using primary structure analysis. BMC Bioinformatics 7(S-4) (2006)

Chaoyang Zhang, Peng Li, Arun Rajendran, Youping Deng, Dequan Chen: Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data. BMC Bioinformatics 7(S-4) (2006)

Youping Deng, Yinghua Dong, Susan J. Brown, Chaoyang Zhang: An Integrated Web-Based Model for Management, Analysis and Retrieval of EST Biological Information. APWeb Workshops 2006: 931-938

Chaoyang Zhang, Peng Li, Arun Rajendran, Youping Deng: Parallel Multicategory Support Vector Machines (PMC-SVM) for Classifying Microcarray Data. IMSCCS (1) 2006: 110-115

Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri: Identification of New Members of Hydrophobin Family Using Primary Structure Analysis. IMSCCS (1) 2006: 116-122

Judong Shen, Shing I. Chang, E. Stanley Lee, Youping Deng, Susan J. Brown: Determination of cluster number in clustering microarray data. Applied Mathematics and Computation 169(2): 1172-1185 (2005)

Youping Deng, Venkatachalam Chokalingam, Chaoyang Zhang: Markov Chain Correlation Based Clustering of Gene Expression Data. ITCC (2) 2005: 750-755

Navodit Kaushik, Chaoyang Zhang, Beddhu Murali, Vijayaraj Nagarajan, Sanyogita Lakhera, Youping Deng: Parallel Virtual Screening for Prediction of Antimicrobial Activity Using Fourier Transforms. PDPTA 2005: 1355-

Qingsong Zhu, Youping Deng, Phaneendra Vanka, Susan J. Brown, Subbaratnam Muthukrishnan, Karl J. Kramer: Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome. Bioinformatics 20(2): 161-169 (2004)

Hongying Jiang, Youping Deng, Huann-Sheng Chen, Lin Tao, Qiuying Sha, Jun Chen, Chung-Jui Tsai, Shuanglin Zhang: Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes. BMC Bioinformatics 5: 81 (2004)

Yi Lu, Shiyong Lu, Farshad Fotouhi, Youping Deng, Susan J. Brown: Incremental genetic K-means algorithm and its application in gene expression data analysis. BMC Bioinformatics 5: 172 (2004)

Yi Lu, Shiyong Lu, Farshad Fotouhi, Youping Deng, Susan J. Brown: FGKA: a Fast Genetic K-means Clustering Algorithm. SAC 2004: 622-623