Joshua C. Denny

Ruth M. Reeves, Ferdo R. Ong, Michael E. Matheny, Joshua C. Denny, Dominik Aronsky, Glenn T. Gobbel, Diane Montella, Theodore Speroff, Steven H. Brown: Detecting temporal expressions in medical narratives. I. J. Medical Informatics 82(2): 118-127 (2013)

Mei Liu, Eugenia Renne McPeek Hinz, Michael Edwin Matheny, Joshua C. Denny, Jonathan Scott Schildcrout, Randolph A. Miller, Hua Xu: Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records. JAMIA 20(3): 420-426 (2013)

Nicholas P. Tatonetti, Joshua C. Denny, Russ B. Altman: Correspondence: Response to 'Use of an algorithm for identifying hidden drug-drug interactions in adverse event reports' by Gooden et al. JAMIA 20(3): 591 (2013)

Si Sun, Xiaomu Zhou, Joshua C. Denny, S. Trent Rosenbloom, Hua Xu: Messaging to your doctors: understanding patient-provider communications via a portal system. CHI 2013: 1739-1748

Yanxin Lu, Hua Xu, Neeraja B. Peterson, Qi Dai, Min Jiang, Joshua C. Denny, Mei Liu: Extracting epidemiologic exposure and outcome terms from literature using machine learning approaches. IJDMB 6(4): 447-459 (2012)

Abel N. Kho, M. Geoffrey Hayes, Laura Rasmussen-Torvik, Jennifer A. Pacheco, William K. Thompson, Loren L. Armstrong, Joshua C. Denny, Peggy L. Peissig, Aaron W. Miller, Wei-Qi Wei, Suzette J. Bielinski, Christopher G. Chute, Cynthia L. Leibson, Gail P. Jarvik, David R. Crosslin, Christopher S. Carlson, Katherine M. Newton, Wendy A. Wolf, Rex L. Chisholm, William L. Lowe: Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. JAMIA 19(2): 212-218 (2012)

Peggy L. Peissig, Luke V. Rasmussen, Richard L. Berg, James G. Linneman, Catherine A. McCarty, Carol Waudby, Lin Chen, Joshua C. Denny, Russell A. Wilke, Jyotishman Pathak, David Carrell, Abel N. Kho, Justin B. Starren: Importance of multi-modal approaches to effectively identify cataract cases from electronic health records. JAMIA 19(2): 225-234 (2012)

Shane P. Stenner, Kevin B. Johnson, Joshua C. Denny: Focus on health information technology, electronic health records and their financial impact: PASTE: patient-centered SMS text tagging in a medication management system. JAMIA 19(3): 368-374 (2012)

Robert J. Carroll, William K. Thompson, Anne E. Eyler, Arthur M. Mandelin, Tianxi Cai, Raquel M. Zink, Jennifer A. Pacheco, Chad S. Boomershine, Thomas A. Lasko, Hua Xu, Elizabeth W. Karlson, Raul G. Perez, Vivian Gainer, Shawn N. Murphy, Eric M. Ruderman, Richard M. Pope, Robert M. Plenge, Abel N. Kho, Katherine P. Liao, Joshua C. Denny: Portability of an algorithm to identify rheumatoid arthritis in electronic health records. JAMIA 19(e1) (2012)

Mei Liu, Michael E. Matheny, Yonghui Wu, Eugenia R. McPeek Hinz, Joshua C. Denny, Jonathan S. Schildcrout, Randolph A. Miller, Hua Xu: Detecting Adverse Drug Reactions Using Inpatient Medication Orders and Laboratory Tests Data. HISB 2012: 131

Eugenia R. McPeek Hinz, Lisa Bastarache, Joshua C. Denny: A General Purpose Phenotype Algorithm for Venous Thromboembolism Using Billing Codes and Natural Language Processing. HISB 2012: 149

S. Trent Rosenbloom, Joshua C. Denny, Hua Xu, Nancy M. Lorenzi, William W. Stead, Kevin B. Johnson: Data from clinical notes: a perspective on the tension between structure and flexible documentation. JAMIA 18(2): 181-186 (2011)

Hua Xu, Min Jiang, Matt Oetjens, Erica A. Bowton, Andrea H. Ramirez, Janina M. Jeff, Melissa A. Basford, Jill M. Pulley, James D. Cowan, Xiaoming Wang, Marylyn D. Ritchie, Daniel R. Masys, Dan M. Roden, Dana C. Crawford, Joshua C. Denny: Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin. JAMIA 18(4): 387-391 (2011)

Min Jiang, Yukun Chen, Mei Liu, S. Trent Rosenbloom, Subramani Mani, Joshua C. Denny, Hua Xu: A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries. JAMIA 18(5): 601-606 (2011)

Hua Xu, Samir AbdelRahman, Yanxin Lu, Joshua C. Denny, Son Doan: Applying semantic-based probabilistic context-free grammar to medical language processing - A preliminary study on parsing medication sentences. Journal of Biomedical Informatics 44(6): 1068-1075 (2011)

Joshua C. Denny, Marylyn D. Ritchie, Melissa A. Basford, Jill M. Pulley, Lisa Bastarache, Kristin Brown-Gentry, Deede Wang, Daniel R. Masys, Dan M. Roden, Dana C. Crawford: PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations. Bioinformatics 26(9): 1205-1210 (2010)

Mei Liu, Joshua C. Denny, Subramani Mani, Yukun Chen, Yong Hu, Hua Xu: Identifying potential drugs that induce QT prolongation using electronic medical records. BMC Bioinformatics 11(S-4): P2 (2010)

Hua Xu, Shane P. Stenner, Son Doan, Kevin B. Johnson, Lemuel R. Waitman, Joshua C. Denny: Application of information technology: MedEx: a medication information extraction system for clinical narratives. JAMIA 17(1): 19-24 (2010)

Grigorios Loukides, Joshua C. Denny, Bradley Malin: The disclosure of diagnosis codes can breach research participants' privacy. JAMIA 17(3): 322-327 (2010)

Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson: Extracting timing and status descriptors for colonoscopy testing from electronic medical records. JAMIA 17(4): 383-388 (2010)

Son Doan, Lisa Bastarache, Sergio Klimkowski, Joshua C. Denny, Hua Xu: Integrating existing natural language processing tools for medication extraction from discharge summaries. JAMIA 17(5): 528-531 (2010)

Jonathan S. Schildcrout, Melissa A. Basford, Jill M. Pulley, Daniel R. Masys, Dan M. Roden, Deede Wang, Christopher G. Chute, Iftikhar J. Kullo, David Carrell, Peggy L. Peissig, Abel N. Kho, Joshua C. Denny: An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. Journal of Biomedical Informatics 43(6): 914-923 (2010)

Joshua C. Denny, Anderson Spickard III, Kevin B. Johnson, Neeraja B. Peterson, Josh F. Peterson, Randolph A. Miller: Research Paper: Evaluation of a Method to Identify and Categorize Section Headers in Clinical Documents. JAMIA 16(6): 806-815 (2009)

Joshua C. Denny, Lisa Bastarache, Elizabeth Ann Sastre, Anderson Spickard III: Tracking medical students' clinical experiences using natural language processing. Journal of Biomedical Informatics 42(5): 781-789 (2009)

Joshua C. Denny, Josh F. Peterson: Identifying QT prolongation from ECG impressions using Natural Language Processing and Negation Detection. MedInfo 2007: 1283-1288

Joshua C. Denny, Jeffrey D. Smithers, Randolph A. Miller, Anderson Spickard III: Research Paper: "Understanding" Medical School Curriculum Content Using KnowledgeMap. JAMIA 10(4): 351-362 (2003)