Helena F. Deus

Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena F. Deus, Brian Sidlauskas, Christian M. Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger A. Vos, Campbell O. Webb, Luke J. Harmon, Megan Pirrung, Brian O'Meara, Matthew W. Pennell, Siavash Mirarab, Michael S. Rosenberg, James P. Balhoff, Holly M. Bik, Tracy A. Heath, Peter E. Midford, Joseph W. Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E. Alfaro, Aaron Steele, Greg Jordan: Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. BMC Bioinformatics 14: 158 (2013)

Helena F. Deus, Eric Prud'hommeaux, Michael Miller, Jun Zhao, James Malone, Tomasz Adamusiak, Jim McCusker, Sudeshna Das, Philippe Rocca-Serra, Ronan Fox, M. Scott Marshall: Translating standards into practice - One Semantic Web API for Gene Expression. Journal of Biomedical Informatics 45(4): 782-794 (2012)

M. Scott Marshall, Richard Boyce, Helena F. Deus, Jun Zhao, Egon L. Willighagen, Matthias Samwald, Elgar Pichler, Janos Hajagos, Eric Prud'hommeaux, Susie Stephens: Emerging practices for mapping and linking life sciences data using RDF - A case series. J. Web Sem. 14: 2-13 (2012)

Andrea Splendiani, Andra Waagmeester, Carina Haupt, Helena F. Deus: SemScape: Visualizating Semantic Web Data Landscapes with Cytoscape 3.0. SWAT4LS 2012

Helena F. Deus, Miria C. Correa, Romesh Stanislaus, Maria Miragaia, Wolfgang Maass, Hermínia de Lencastre, Ronan Fox, Jonas S. Almeida: S3QL: A distributed domain specific language for controlled semantic integration of life sciences data. BMC Bioinformatics 12: 285 (2011)

Helena F. Deus, Jun Zhao, Jim McCusker, Ronan Fox, Eric Prud'hommeaux, James Malone, Sudeshna Das, Michael Miller, Tomasz Adamusiak, Philippe Rocca-Serra, M. Scott Marshall: Translating standards into practice: one semantic web API for gene expression. SWAT4LS 2011: 6-7

Jonas S. Almeida, Helena F. Deus, Wolfgang Maass: S3DB core: a framework for RDF generation and management in bioinformatics infrastructures. BMC Bioinformatics 11: 387 (2010)

Helena F. Deus, Diogo F. Veiga, Pablo R. Freire, John N. Weinstein, Gordon B. Mills, Jonas S. Almeida: Exposing the cancer genome atlas as a SPARQL endpoint. Journal of Biomedical Informatics 43(6): 998-1008 (2010)

Miria C. Correa, Helena F. Deus, Ana Tereza R. Vasconcelos, Yuki Hayashi, Jaffer A. Ajani, Srikrishna V. Patnana, Jonas S. Almeida: AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services. BMC Med. Inf. & Decision Making 10: 65 (2010)

Romesh Stanislaus, Mark Carey, Helena F. Deus, Kevin R. Coombes, Bryan T. J. Hennessy, Gordon B. Mills, Jonas S. Almeida: RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays. BMC Bioinformatics 9 (2008)