Edward R. Dougherty

Kwadwo Agyepong, Fang-Han Hsu, Edward R. Dougherty, Erchin Serpedin: Spectral Analysis on Time-Course Expression Data: Detecting Periodic Genes Using a Real-Valued Iterative Adaptive Approach. Adv. Bioinformatics 2013 (2013)

Blaise Hanczar, Edward R. Dougherty: The reliability of estimated confidence intervals for classification error rates when only a single sample is available. Pattern Recognition 46(3): 1067-1077 (2013)

Lori A. Dalton, Edward R. Dougherty: Optimal classifiers with minimum expected error within a Bayesian framework - Part II: Properties and performance analysis. Pattern Recognition 46(5): 1288-1300 (2013)

Lori A. Dalton, Edward R. Dougherty: Optimal classifiers with minimum expected error within a Bayesian framework - Part I: Discrete and Gaussian models. Pattern Recognition 46(5): 1301-1314 (2013)

Esmaeil Atashpaz-Gargari, Chao Sima, Ulisses Braga-Neto, Edward R. Dougherty: Relationship between the accuracy of classifier error estimation and complexity of decision boundary. Pattern Recognition 46(5): 1315-1322 (2013)

Byung-Jun Yoon, Xiaoning Qian, Edward R. Dougherty: Quantifying the Objective Cost of Uncertainty in Complex Dynamical Systems. IEEE Transactions on Signal Processing 61(9): 2256-2266 (2013)

Youting Sun, Jianqiu Zhang, Ulisses Braga-Neto, Edward R. Dougherty: BPDA2d - a 2D global optimization-based Bayesian peptide detection algorithm for liquid chromatograph-mass spectrometry. Bioinformatics 28(4): 564-572 (2012)

Chen Zhao, Jianping Hua, Michael L. Bittner, Ivan Ivanov, Edward R. Dougherty: Identifying mechanistic similarities in drug responses. Bioinformatics 28(14): 1902-1910 (2012)

Mohammadmahdi R. Yousefi, Edward R. Dougherty: Performance reproducibility index for classification. Bioinformatics 28(21): 2824-2833 (2012)

Xiangfang Li, Lijun Qian, Edward R. Dougherty: Dynamical modeling of drug effect using hybrid systems. EURASIP J. Bioinformatics and Systems Biology 2012: 19 (2012)

Amin Zollanvari, Ulisses Braga-Neto, Edward R. Dougherty: Exact representation of the second-order moments for resubstitution and leave-one-out error estimation for linear discriminant analysis in the univariate heteroskedastic Gaussian model. Pattern Recognition 45(2): 908-917 (2012)

Lori A. Dalton, Edward R. Dougherty: Optimal mean-square-error calibration of classifier error estimators under Bayesian models. Pattern Recognition 45(6): 2308-2320 (2012)

Edward R. Dougherty: Genomic Signal Processing [Life Sciences]. IEEE Signal Process. Mag. 29(3): 124-129 (2012)

Fang-Han Hsu, Erchin Serpedin, Yidong Chen, Edward R. Dougherty: Stochastic Modeling of the Relationship between Copy Number and Gene Expression Based on Transcriptional Logic. IEEE Trans. Biomed. Engineering 59(1): 272-280 (2012)

Jason M. Knight, Aniruddha Datta, Edward R. Dougherty: Generating Stochastic Gene Regulatory Networks Consistent With Pathway Information and Steady-State Behavior. IEEE Trans. Biomed. Engineering 59(6): 1701-1710 (2012)

Fang-Han Hsu, Erchin Serpedin, Yidong Chen, Edward R. Dougherty: Evaluating Dynamic Effects of Copy Number Alterations on Gene Expression Using a Single Transcription Model. IEEE Trans. Biomed. Engineering 59(10): 2726-2736 (2012)

Xiaoning Qian, Edward R. Dougherty: Intervention in Gene Regulatory Networks via Phenotypically Constrained Control Policies Based on Long-Run Behavior. IEEE/ACM Trans. Comput. Biology Bioinform. 9(1): 123-136 (2012)

Mohamed N. Nounou, Hazem N. Nounou, Nader Meskin, Aniruddha Datta, Edward R. Dougherty: Multiscale Denoising of Biological Data: A Comparative Analysis. IEEE/ACM Trans. Comput. Biology Bioinform. 9(5): 1539-1545 (2012)

Hazem N. Nounou, Mohamed N. Nounou, Nader Meskin, Aniruddha Datta, Edward R. Dougherty: Fuzzy Intervention in Biological Phenomena. IEEE/ACM Trans. Comput. Biology Bioinform. 9(6): 1819-1825 (2012)

Lori A. Dalton, Edward R. Dougherty: Exact Sample Conditioned MSE Performance of the Bayesian MMSE Estimator for Classification Error - Part I: Representation. IEEE Transactions on Signal Processing 60(5): 2575-2587 (2012)

Lori A. Dalton, Edward R. Dougherty: Exact Sample Conditioned MSE Performance of the Bayesian MMSE Estimator for Classification Error - Part II: Consistency and Performance Analysis. IEEE Transactions on Signal Processing 60(5): 2588-2603 (2012)

Mohammadmahdi R. Yousefi, Aniruddha Datta, Edward R. Dougherty: Optimal Intervention Strategies for Therapeutic Methods With Fixed-Length Duration of Drug Effectiveness. IEEE Transactions on Signal Processing 60(9): 4930-4944 (2012)

Mohammadmahdi R. Yousefi, Aniruddha Datta, Edward R. Dougherty: Optimal therapeutic methods with random-length response in probabilistic boolean networks. GENSiPS 2012: 50-53

Lori A. Dalton, Edward R. Dougherty: Optimal Bayesian classification and its application to gene regulatory networks. GENSiPS 2012: 164-167

Xiaoning Qian, Byung-Jun Yoon, Edward R. Dougherty: Structural intervention of gene regulatory networks by general rank-k matrix perturbation. ICASSP 2012: 729-732

Edward R. Dougherty: Validation of gene regulatory networks: scientific and inferential. Briefings in Bioinformatics 12(3): 245-252 (2011)

Ritwik Layek, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty: Cancer therapy design based on pathway logic. Bioinformatics 27(4): 548-555 (2011)

Mohammadmahdi R. Yousefi, Jianping Hua, Edward R. Dougherty: Multiple-rule bias in the comparison of classification rules. Bioinformatics 27(12): 1675-1683 (2011)

Lori A. Dalton, Edward R. Dougherty: Application of the Bayesian MMSE estimator for classification error to gene expression microarray data. Bioinformatics [ISMB/ECCB] 27(13): 1822-1831 (2011)

Chao Sima, Ulisses Braga-Neto, Edward R. Dougherty: High-dimensional bolstered error estimation. Bioinformatics 27(21): 3056-3064 (2011)

Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty: A CoD-based stationary control policy for intervening in large gene regulatory networks. BMC Bioinformatics 12(S-10): S10 (2011)

Mohammad Shahrokh Esfahani, Byung-Jun Yoon, Edward R. Dougherty: Probabilistic reconstruction of the tumor progression process in gene regulatory networks in the presence of uncertainty. BMC Bioinformatics 12(S-10): S9 (2011)

Xiangfang Li, Lijun Qian, Michael L. Bittner, Edward R. Dougherty: Characterization of Drug Efficacy Regions Based on Dosage and Frequency Schedules. IEEE Trans. Biomed. Engineering 58(3): 488-498 (2011)

Nader Meskin, Hazem N. Nounou, Mohamed N. Nounou, Aniruddha Datta, Edward R. Dougherty: Intervention in Biological Phenomena Modeled by S-Systems. IEEE Trans. Biomed. Engineering 58(5): 1260-1267 (2011)

Lori A. Dalton, Edward R. Dougherty: Bayesian Minimum Mean-Square Error Estimation for Classification Error - Part I: Definition and the Bayesian MMSE Error Estimator for Discrete Classification. IEEE Transactions on Signal Processing 59(1): 115-129 (2011)

Lori A. Dalton, Edward R. Dougherty: Bayesian Minimum Mean-Square Error Estimation for Classification Error - Part II: Linear Classification of Gaussian Models. IEEE Transactions on Signal Processing 59(1): 130-144 (2011)

Amin Zollanvari, Ulisses de Mendonça Braga Neto, Edward R. Dougherty: Analytic Study of Performance of Error Estimators for Linear Discriminant Analysis. IEEE Transactions on Signal Processing 59(9): 4238-4255 (2011)

Zhenghao Zhang, Youting Sun, Ulisses Braga-Neto, Edward R. Dougherty, Jianqiu Zhang: A parallel programming framework with Markovian messaging for LC-MS peptide detection. BIBM Workshops 2011: 1057-1059

Ritwik Layek, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty: Combination therapy design for cancer: A digital systems approach. CDC-ECE 2011: 4377-4382

Nader Meskin, Hazem N. Nounou, Mohamed N. Nounou, Aniruddha Datta, Edward R. Dougherty: Parameter estimation of biological phenomena modeled by S-systems: An Extended Kalman filter approach. CDC-ECE 2011: 4424-4429

Xiaoning Qian, Byung-Jun Yoon, Edward R. Dougherty: Uncertainty-based essentiality in gene regulatory networks. GENSiPS 2011: 17-20

Mohammadmahdi R. Yousefi, Aniruddha Datta, Edward R. Dougherty: Modeling cyclic and acyclic therapeutic methods with persistent intervention effect in probabilistic Boolean networks. GENSiPS 2011: 38-41

Fang-Han Hsu, Erchin Serpedin, Tzu-Hung Hsiao, Alexander J. R. Bishop, Edward R. Dougherty, Yidong Chen: Identifying genes associated with chemotherapy response in ovarian carcinomas based on DNA copy number and expression profiles. GENSiPS 2011: 46-49

Xiangfang Li, Lijun Qian, Michael L. Bittner, Edward R. Dougherty: Assessing the efficacy of molecularly targeted agents by using Kalman filter. GENSiPS 2011: 50-51

Jason M. Knight, Edward R. Dougherty: Attractor estimation and model refinement for stochastic regulatory network models. GENSiPS 2011: 54-55

Chen Zhao, Ivan Ivanov, Michael L. Bittner, Edward R. Dougherty: Pathway analysis in the context of Bayesian networks - mathematical modeling of master and canalizing genes. GENSiPS 2011: 64-65

Fang-Han Hsu, Erchin Serpedin, Yidong Chen, Edward R. Dougherty: Stochastic modeling of dynamic effects of copy number alterations upon gene expression levels. GENSiPS 2011: 83-86

Mohammad Shahrokh Esfahani, Amin Zollanvari, Byung-Jun Yoon, Edward R. Dougherty: Designing enhanced classifiers using prior process knowledge: Regularized maximum-likelihood. GENSiPS 2011: 91-94

Esmaeil Atashpaz-Gargari, Ulisses Braga-Neto, Edward R. Dougherty: Multiple reaction monitoring: Modeling and systematic analysis. GENSiPS 2011: 105-107

Youting Sun, Ulisses Braga-Neto, Edward R. Dougherty: Modeling and systematic analysis of LC-MS proteomics pipeline. GENSiPS 2011: 112-116

Lori A. Dalton, Edward R. Dougherty: Classifier error estimator performance in a Bayesian context. GENSiPS 2011: 135-138

Esmaeil Atashpaz-Gargari, Chao Sima, Ulisses Braga-Neto, Edward R. Dougherty: Relationship between the accuracy of classifier error estimation and distribution complexity. GENSiPS 2011: 147-149

Ilya Shmulevich, Edward R. Dougherty: Probabilistic Boolean Networks - The Modeling and Control of Gene Regulatory Networks. SIAM 2010, isbn 978-0-89871-692-4, pp. I-XIII, 1-267

Mohammadmahdi R. Yousefi, Jianping Hua, Chao Sima, Edward R. Dougherty: Reporting bias when using real data sets to analyze classification performance. Bioinformatics 26(1): 68-76 (2010)

Blaise Hanczar, Jianping Hua, Chao Sima, John N. Weinstein, Michael L. Bittner, Edward R. Dougherty: Small-sample precision of ROC-related estimates. Bioinformatics 26(6): 822-830 (2010)

Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty: A CoD-based reduction algorithm for designing stationary control policies on Boolean networks. Bioinformatics 26(12): 1556-1563 (2010)

Xiaoning Qian, Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty: State reduction for network intervention in probabilistic Boolean networks. Bioinformatics 26(24): 3098-3104 (2010)

Youting Sun, Jianqiu Zhang, Ulisses Braga-Neto, Edward R. Dougherty: BPDA - A Bayesian peptide detection algorithm for mass spectrometry. BMC Bioinformatics 11: 490 (2010)

Junjie Su, Byung-Jun Yoon, Edward R. Dougherty: Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network. BMC Bioinformatics 11(S-6): S8 (2010)

Edward R. Dougherty, Ranadip Pal, Xiaoning Qian, Michael L. Bittner, Aniruddha Datta: Stationary and structural control in gene regulatory networks: basic concepts. Int. J. Systems Science 41(1): 5-16 (2010)

Ulisses Braga-Neto, Edward R. Dougherty: Exact correlation between actual and estimated errors in discrete classification. Pattern Recognition Letters 31(5): 407-412 (2010)

Amin Zollanvari, Ulisses Braga-Neto, Edward R. Dougherty: Joint sampling distribution between actual and estimated classification errors for linear discriminant analysis. IEEE Transactions on Information Theory 56(2): 784-804 (2010)

Ivan Ivanov, Plamen Simeonov, Noushin Ghaffari, Xiaoning Qian, Edward R. Dougherty: Selection policy-induced reduction mappings for Boolean networks. IEEE Transactions on Signal Processing 58(9): 4871-4882 (2010)

Ritwik Layek, Aniruddha Datta, Edward R. Dougherty: From biological pathways to regulatory networks. CDC 2010: 5781-5786

Xiangfang Li, Lijun Qian, Edward R. Dougherty: Modeling treatment and drug effects at the molecular level using hybrid system theory. CIBCB 2010: 1-7

Lori A. Dalton, Edward R. Dougherty: Bayesian MMSE estimation of classification error and performance on real genomic data. GENSiPS 2010: 1-4

Xiaoning Qian, Edward R. Dougherty: A comparative study on sensitivities of Boolean networks. GENSiPS 2010: 1-4

Mohammadmahdi R. Yousefi, Jianping Hua, Chao Sima, Edward R. Dougherty: Effects of partial reporting of classification results. GENSiPS 2010: 1-4

Chen Zhao, Ivan Ivanov, Manasvi Shah, Laurie A. Davidson, Robert S. Chapkin, Edward R. Dougherty: Conditioning-based model for the regulatory activities of microRNAs in specific dietary contexts. GENSiPS 2010: 1-4

Amin Zollanvari, Ulisses Braga-Neto, Edward R. Dougherty: RMS bounds and sample size considerations for error estimation in linear discriminant analysis. GENSiPS 2010: 1-4

Ritwik Layek, Aniruddha Datta, Ranadip Pal, Edward R. Dougherty: Adaptive intervention in probabilistic boolean networks. Bioinformatics 25(16): 2042-2048 (2009)

Amin Zollanvari, Mary Jane Cunningham, Ulisses Braga-Neto, Edward R. Dougherty: Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes. BMC Bioinformatics 10(S-11): 10 (2009)

Babak Faryabi, Golnaz Vahedi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty: Intervention in Context-Sensitive Probabilistic Boolean Networks Revisited. EURASIP J. Bioinformatics and Systems Biology 2009 (2009)

Youting Sun, Ulisses Braga-Neto, Edward R. Dougherty: Impact of Missing Value Imputation on Classification for DNA Microarray Gene Expression Data - A Model-Based Study. EURASIP J. Bioinformatics and Systems Biology 2009 (2009)

Wentao Zhao, Erchin Serpedin, Edward R. Dougherty: Spectral Preprocessing for Clustering Time-Series Gene Expressions. EURASIP J. Bioinformatics and Systems Biology 2009 (2009)

Wentao Zhao, Erchin Serpedin, Edward R. Dougherty: Identifying Genes Involved in Cyclic Processes by Combining Gene Expression Analysis and Prior Knowledge. EURASIP J. Bioinformatics and Systems Biology 2009 (2009)

Jianping Hua, Waibhav Tembe, Edward R. Dougherty: Performance of feature-selection methods in the classification of high-dimension data. Pattern Recognition 42(3): 409-424 (2009)

Amin Zollanvari, Ulisses Braga-Neto, Edward R. Dougherty: On the sampling distribution of resubstitution and leave-one-out error estimators for linear classifiers. Pattern Recognition 42(11): 2705-2723 (2009)

Qian Xu, Jianping Hua, Zixiang Xiong, Michael L. Bittner, Edward R. Dougherty: The effect of microarray image compression on expression-based classification. Signal, Image and Video Processing 3(1): 53-61 (2009)

Golnaz Vahedi, Babak Faryabi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty: Optimal Intervention Strategies for Cyclic Therapeutic Methods. IEEE Trans. Biomed. Engineering 56(2): 281-291 (2009)

Edward R. Dougherty, Marcel Brun, Jeffrey M. Trent, Michael L. Bittner: Conditioning-Based Modeling of Contextual Genomic Regulation. IEEE/ACM Trans. Comput. Biology Bioinform. 6(2): 310-320 (2009)

Ranadip Pal, Aniruddha Datta, Edward R. Dougherty: Bayesian robustness in the control of gene regulatory networks. IEEE Transactions on Signal Processing 57(9): 3667-3678 (2009)

Haixin Wang, Lijun Qian, Edward R. Dougherty: Steady-state analysis of genetic regulatory networks modeled by nonlinear ordinary differential equations. CIBCB 2009: 182-185

Babak Faryabi, Golnaz Vahedi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty: Open-Loop Feedback Intervention: Control of gene regulatory networks with unmeasurable context. GENSiPS 2009: 1-2

Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty: A CoD based reduction algorithm for Boolean and probabilistic Boolean networks. GENSiPS 2009: 1-2

Ranadip Pal, Aniruddha Datta, Edward R. Dougherty: Quantification of data extraction noise in probabilistic Boolean Network modeling. GENSiPS 2009: 1-4

Xiaoning Qian, Edward R. Dougherty: Control-compatible state reduction for Boolean networks. GENSiPS 2009: 1-2

Chao Sima, Thang T. Vu, Ulisses Braga-Neto, Edward R. Dougherty: Bolstered error estimator with feature selection. GENSiPS 2009: 1-2

Golnaz Vahedi, Ilya Shmulevich, Wenbin Liu, Edward R. Dougherty: Critical Boolean networks require minimal intervention rate. GENSiPS 2009: 1-2

Thang T. Vu, Ulisses Braga-Neto, Edward R. Dougherty: Bagging degrades the performance of linear discriminant classifiers. GENSiPS 2009: 1-2

Amin Zollanvari, Ulisses Braga-Neto, Edward R. Dougherty: Sample size calculation from specified RMS of the resubstitution error for linear classifiers. GENSiPS 2009: 1-2

Blaise Hanczar, Edward R. Dougherty: Classification with reject option in gene expression data. Bioinformatics 24(17): 1889-1895 (2008)

Marcel Brun, Qian Xu, Edward R. Dougherty: Which Is Better: Holdout or Full-Sample Classifier Design? EURASIP J. Bioinformatics and Systems Biology 2008 (2008)

Babak Faryabi, Golnaz Vahedi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty: Optimal Constrained Stationary Intervention in Gene Regulatory Networks. EURASIP J. Bioinformatics and Systems Biology 2008 (2008)

Wenbin Liu, Harri Lähdesmäki, Edward R. Dougherty, Ilya Shmulevich: Inference of Boolean Networks Using Sensitivity Regularization. EURASIP J. Bioinformatics and Systems Biology 2008 (2008)

Wentao Zhao, Kwadwo Agyepong, Erchin Serpedin, Edward R. Dougherty: Detecting Periodic Genes from Irregularly Sampled Gene Expressions: A Comparison Study. EURASIP J. Bioinformatics and Systems Biology 2008 (2008)

Wentao Zhao, Erchin Serpedin, Edward R. Dougherty: Recovering Genetic Regulatory Networks from Chromatin Immunoprecipitation and Steady-State Microarray Data. EURASIP J. Bioinformatics and Systems Biology 2008 (2008)

Babak Faryabi, Jean-François Chamberland, Golnaz Vahedi, Aniruddha Datta, Edward R. Dougherty: Optimal Intervention in Asynchronous Genetic Regulatory Networks. J. Sel. Topics Signal Processing 2(3): 412-423 (2008)

D. C. Martins, Ulisses de Mendonça Braga Neto, Ronaldo Fumio Hashimoto, Michael L. Bittner, Edward R. Dougherty: Intrinsically Multivariate Predictive Genes. J. Sel. Topics Signal Processing 2(3): 424-439 (2008)

Chao Sima, Edward R. Dougherty: The peaking phenomenon in the presence of feature-selection. Pattern Recognition Letters 29(11): 1667-1674 (2008)

Golnaz Vahedi, Babak Faryabi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty: Intervention in Gene Regulatory Networks via a Stationary Mean-First-Passage-Time Control Policy. IEEE Trans. Biomed. Engineering 55(10): 2319-2331 (2008)

Wentao Zhao, Erchin Serpedin, Edward R. Dougherty: Inferring Connectivity of Genetic Regulatory Networks Using Information-Theoretic Criteria. IEEE/ACM Trans. Comput. Biology Bioinform. 5(2): 262-274 (2008)

Ranadip Pal, Aniruddha Datta, Edward R. Dougherty: Robust Intervention in Probabilistic Boolean Networks. IEEE Transactions on Signal Processing 56(3): 1280-1294 (2008)

Lijun Qian, Haixin Wang, Edward R. Dougherty: Inference of Noisy Nonlinear Differential Equation Models for Gene Regulatory Networks Using Genetic Programming and Kalman Filtering. IEEE Transactions on Signal Processing 56(7-2): 3327-3339 (2008)

Xiaoning Qian, Edward R. Dougherty: Effect of Function Perturbation on the Steady-State Distribution of Genetic Regulatory Networks: Optimal Structural Intervention. IEEE Transactions on Signal Processing 56(10-1): 4966-4976 (2008)

Wentao Zhao, Kwadwo Agyepong, Erchin Serpedin, Edward R. Dougherty: Identifying drosophila cell-cycle regulated genes from irregular microarray data. ICASSP 2008: 633-636

Jaakko Astola, Karen O. Egiazarian, Edward R. Dougherty (Eds.): Image Processing: Algorithms and Systems VI, 28 January 2008, San Jose, California, USA. SPIE Proceedings 6812, SPIE 2008

Jianping Hua, David W. Craig, Marcel Brun, Jennifer Webster, Victoria Zismann, Waibhav Tembe, Keta Joshipura, Matthew J. Huentelman, Edward R. Dougherty, Dietrich A. Stephan: SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays. Bioinformatics 23(1): 57-63 (2007)

Yufei Xiao, Edward R. Dougherty: The impact of function perturbations in Boolean networks. Bioinformatics 23(10): 1265-1273 (2007)

Marcel Brun, Seungchan Kim, Woonjung Choi, Edward R. Dougherty: Comparison of Gene Regulatory Networks via Steady-State Trajectories. EURASIP J. Bioinformatics and Systems Biology 2007 (2007)

Edward R. Dougherty, Tatsuya Akutsu, Paul Dan Cristea, Ahmed H. Tewfik: Genetic Regulatory Networks. EURASIP J. Bioinformatics and Systems Biology 2007 (2007)

Blaise Hanczar, Jianping Hua, Edward R. Dougherty: Decorrelation of the True and Estimated Classifier Errors in High-Dimensional Settings. EURASIP J. Bioinformatics and Systems Biology 2007 (2007)

Stephen Marshall, Le Yu, Yufei Xiao, Edward R. Dougherty: Inference of a Probabilistic Boolean Network from a Single Observed Temporal Sequence. EURASIP J. Bioinformatics and Systems Biology 2007 (2007)

Yufei Xiao, Jianping Hua, Edward R. Dougherty: Quantification of the Impact of Feature Selection on the Variance of Cross-Validation Error Estimation. EURASIP J. Bioinformatics and Systems Biology 2007 (2007)

Marcel Brun, Chao Sima, Jianping Hua, James Lowey, Brent Carroll, Edward Suh, Edward R. Dougherty: Model-based evaluation of clustering validation measures. Pattern Recognition 40(3): 807-824 (2007)

Ivan Ivanov, Ranadip Pal, Edward R. Dougherty: Dynamics Preserving Size Reduction Mappings for Probabilistic Boolean Networks. IEEE Transactions on Signal Processing 55(5-2): 2310-2322 (2007)

Haixin Wang, Lijun Qian, Edward R. Dougherty: Inference of Gene Regulatory Networks using S-System: A Unified Approach. CIBCB 2007: 82-89

Wentao Zhao, Kwadwo Agyepong, Erchin Serpedin, Edward R. Dougherty: Reconstruction of Genetic Regulatory Networks Based on the Posterior Probabilities of Gene Regulations. ICASSP (1) 2007: 257-360

Jaakko Astola, Karen O. Egiazarian, Edward R. Dougherty (Eds.): Image Processing: Algorithms and Systems V, 29 January 2007, San Jose, California, USA. SPIE Proceedings 6497, SPIE 2007

Ashish Choudhary, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty: Intervention in a family of Boolean networks. Bioinformatics 22(2): 226-232 (2006)

Ashish Choudhary, Marcel Brun, Jianping Hua, James Lowey, Edward Suh, Edward R. Dougherty: Genetic test bed for feature selection. Bioinformatics 22(7): 837-842 (2006)

Wentao Zhao, Erchin Serpedin, Edward R. Dougherty: Inferring gene regulatory networks from time series data using the minimum description length principle. Bioinformatics 22(17): 2129-2135 (2006)

Chao Sima, Edward R. Dougherty: What should be expected from feature selection in small-sample settings. Bioinformatics 22(19): 2430-2436 (2006)

Jianping Hua, James Lowey, Zixiang Xiong, Edward R. Dougherty: Noise-injected neural networks show promise for use on small-sample expression data. BMC Bioinformatics 7: 274 (2006)

Jianping Hua, Yoganand Balagurunathan, Yidong Chen, James Lowey, Michael L. Bittner, Zixiang Xiong, Edward Suh, Edward R. Dougherty: Normalization Benefits Microarray-Based Classification. EURASIP J. Bioinformatics and Systems Biology 2006 (2006)

Chao Sima, Edward R. Dougherty: Optimal convex error estimators for classification. Pattern Recognition 39(9): 1763-1780 (2006)

Ranadip Pal, Aniruddha Datta, Edward R. Dougherty: Optimal infinite-horizon control for probabilistic Boolean networks. IEEE Transactions on Signal Processing 54(6-2): 2375-2387 (2006)

Edward R. Dougherty, Yufei Xiao: Design of probabilistic Boolean networks under the requirement of contextual data consistency. IEEE Transactions on Signal Processing 54(9): 3603-3613 (2006)

Edward R. Dougherty, Jaakko Astola, Karen O. Egiazarian (Eds.): Image Processing: Algorithms and Systems IV, 17 January 2006, San Jose, California, USA. SPIE Proceedings 5672, SPIE 2006

Wenjiang J. Fu, Edward R. Dougherty, Bani K. Mallick, Raymond J. Carroll: How many samples are needed to build a classifier: a general sequential approach. Bioinformatics 21(1): 63-70 (2005)

Chao Sima, Ulisses Braga-Neto, Edward R. Dougherty: Superior feature-set ranking for small samples using bolstered error estimation. Bioinformatics 21(7): 1046-1054 (2005)

Ranadip Pal, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty: Intervention in context-sensitive probabilistic Boolean networks. Bioinformatics 21(7): 1211-1218 (2005)

Jianping Hua, Zixiang Xiong, James Lowey, Edward Suh, Edward R. Dougherty: Optimal number of features as a function of sample size for various classification rules. Bioinformatics 21(8): 1509-1515 (2005)

Ranadip Pal, Aniruddha Datta, Albert J. Fornace, Michael L. Bittner, Edward R. Dougherty: Boolean relationships among genes responsive to ionizing radiation in the NCI 60 ACDS. Bioinformatics 21(8): 1542-1549 (2005)

Ranadip Pal, Ivan Ivanov, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty: Generating Boolean networks with a prescribed attractor structure. Bioinformatics 21(21): 4021-4025 (2005)

Huan Liu, Edward R. Dougherty, Jennifer G. Dy, Kari Torkkola, Eugene Tuv, Hanchuan Peng, Chris H. Q. Ding, Fuhui Long, Michael E. Berens, Lance Parsons, Zheng Zhao, Lei Yu, George Forman: Evolving Feature Selection. IEEE Intelligent Systems 20(6): 64-76 (2005)

Jianping Hua, Zixiang Xiong, Edward R. Dougherty: Determination of the optimal number of features for quadratic discriminant analysis via the normal approximation to the discriminant distribution. Pattern Recognition 38(3): 403-421 (2005)

Tailen Hsing, Li-Yu Liu, Marcel Brun, Edward R. Dougherty: The coefficient of intrinsic dependence (feature selection using el CID). Pattern Recognition 38(5): 623-636 (2005)

Edward R. Dougherty, Jianping Hua, Zixiang Xiong, Yidong Chen: Optimal robust classifiers. Pattern Recognition 38(10): 1520-1532 (2005)

Ulisses Braga-Neto, Edward R. Dougherty: Exact performance of error estimators for discrete classifiers. Pattern Recognition 38(11): 1799-1814 (2005)

Edward R. Dougherty: The fundamental role of pattern recognition for gene-expression/microarray data in bioinformatics. Pattern Recognition 38(12): 2226-2228 (2005)

Chao Sima, Sanju Attoor, Ulisses Braga-Neto, James Lowey, Edward Suh, Edward R. Dougherty: Impact of error estimation on feature selection. Pattern Recognition 38(12): 2472-2482 (2005)

Paulo J. S. Silva, Ronaldo Fumio Hashimoto, Seungchan Kim, Junior Barrera, Leônidas O. Brandão, Edward Suh, Edward R. Dougherty: Feature selection algorithms to find strong genes. Pattern Recognition Letters 26(10): 1444-1453 (2005)

Marcel Brun, Edward R. Dougherty, Ilya Shmulevich: Steady-state probabilities for attractors in probabilistic Boolean networks. Signal Processing 85(10): 1993-2013 (2005)

Ulisses Braga-Neto, Ronaldo Fumio Hashimoto, Edward R. Dougherty, Danh V. Nguyen, Raymond J. Carroll: Is cross-validation better than resubstitution for ranking genes? Bioinformatics 20(2): 253-258 (2004)

Ulisses Braga-Neto, Edward R. Dougherty: Is cross-validation valid for small-sample microarray classification? Bioinformatics 20(3): 374-380 (2004)

Aniruddha Datta, Ashish Choudhary, Michael L. Bittner, Edward R. Dougherty: External control in Markovian genetic regulatory networks: the imperfect information case. Bioinformatics 20(6): 924-930 (2004)

Ronaldo Fumio Hashimoto, Seungchan Kim, Ilya Shmulevich, Wei Zhang, Michael L. Bittner, Edward R. Dougherty: Growing genetic regulatory networks from seed genes. Bioinformatics 20(8): 1241-1247 (2004)

Sanju Attoor, Edward R. Dougherty, Yidong Chen, Michael L. Bittner, Jeffrey M. Trent: Which is better for cDNA-microarray-based classification: ratios or direct intensities. Bioinformatics 20(16): 2513-2520 (2004)

Xiaobo Zhou, Xiaodong Wang, Ranadip Pal, Ivan Ivanov, Michael L. Bittner, Edward R. Dougherty: A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks. Bioinformatics 20(17): 2918-2927 (2004)

Xiaodong Wang, Edward R. Dougherty, Yidong Chen, Carsten O. Peterson: Editorial. EURASIP J. Adv. Sig. Proc. 2004(1): 3-4 (2004)

Xiaobo Zhou, Xiaodong Wang, Edward R. Dougherty: Gene Prediction Using Multinomial Probit Regression with Bayesian Gene Selection. EURASIP J. Adv. Sig. Proc. 2004(1): 115-124 (2004)

Ivan Ivanov, Edward R. Dougherty: Reduction Mappings between Probabilistic Boolean Networks. EURASIP J. Adv. Sig. Proc. 2004(1): 125-131 (2004)

Edward R. Dougherty, Ilya Shmulevich, Michael L. Bittner: Genomic Signal Processing: The Salient Issues. EURASIP J. Adv. Sig. Proc. 2004(1): 146-153 (2004)

Xiaobo Zhou, Xiaodong Wang, Edward R. Dougherty, Daniel Russ, Edward Suh: Gene Clustering Based on Clusterwide Mutual Information. Journal of Computational Biology 11(1): 147-161 (2004)

Edward R. Dougherty: Automatic design of morphological operators. J. Electronic Imaging 13(3): 486-491 (2004)

Alan C. Green, Edward R. Dougherty, Stephen Marshall, David Greenhalgh: Optimal Filters with Multiresolution Apertures. Journal of Mathematical Imaging and Vision 20(3): 237-250 (2004)

Edward R. Dougherty: A Lattice-Based Minimal Gray-Scale Switching Algorithm for Obtaining the Optimal Increasing Filter from the Optimal Filter. Journal of Mathematical Imaging and Vision 21(1-2): 43-52 (2004)

Marcel Brun, Roberto Hirata Jr., Junior Barrera, Edward R. Dougherty: Nonlinear Filter Design Using Envelopes. Journal of Mathematical Imaging and Vision 21(1-2): 81-97 (2004)

Edward R. Dougherty, Marcel Brun: A probabilistic theory of clustering. Pattern Recognition 37(5): 917-925 (2004)

Ulisses Braga-Neto, Edward R. Dougherty: Bolstered error estimation. Pattern Recognition 37(6): 1267-1281 (2004)

Sanju Attoor, Edward R. Dougherty: Classifier performance as a function of distributional complexity. Pattern Recognition 37(8): 1641-1651 (2004)

Edward R. Dougherty, Jaakko Astola, Karen O. Egiazarian (Eds.): Image Processing: Algorithms and Systems III, 19 January 2004, San Jose, California, USA. SPIE Proceedings 5289, SPIE 2004

Kyeong Eun Lee, Naijun Sha, Edward R. Dougherty, Marina Vannucci, Bani K. Mallick: Gene selection: a Bayesian variable selection approach. Bioinformatics 19(1): 90-97 (2003)

Marcel Brun, David Sabbagh, Seungchan Kim, Edward R. Dougherty: Corrected Small-sample Estimation of the Bayes Error. Bioinformatics 19(8): 944-951 (2003)

Xiaobo Zhou, Xiaodong Wang, Edward R. Dougherty: Missing-value estimation using linear and non-linear regression with Bayesian gene selection. Bioinformatics 19(17): 2302-2307 (2003)

J. McKenzie, Stephen Marshall, Alison J. Gray, Edward R. Dougherty: Morphological Texture Analysis Using the Texture Evolution Function. IJPRAI 17(2): 167-186 (2003)

Tailen Hsing, Sanju Attoor, Edward R. Dougherty: Relation Between Permutation-Test P Values and Classifier Error Estimates. Machine Learning 52(1-2): 11-30 (2003)

Aniruddha Datta, Ashish Choudhary, Michael L. Bittner, Edward R. Dougherty: External Control in Markovian Genetic Regulatory Networks. Machine Learning 52(1-2): 169-191 (2003)

Yoganand Balagurunathan, Edward R. Dougherty: Granulometric parametric estimation for the random Boolean model using optimal linear filters and optimal structuring elements. Pattern Recognition Letters 24(1-3): 283-293 (2003)

Marcel Brun, Edward R. Dougherty, Roberto Hirata Jr., Junior Barrera: Design of optimal binary filters under joint multiresolution-envelope constraint. Pattern Recognition Letters 24(7): 937-945 (2003)

Jaakko Astola, Edward R. Dougherty, Ilya Shmulevich, Ioan Tabus: Genomic signal processing. Signal Processing 83(4): 691-694 (2003)

Ronaldo Fumio Hashimoto, Edward R. Dougherty, Marcel Brun, Zheng-Zheng Zhou, Michael L. Bittner, Jeffrey M. Trent: Efficient selection of feature sets possessing high coefficients of determination based on incremental determinations. Signal Processing 83(4): 695-712 (2003)

Xiaobo Zhou, Xiaodong Wang, Edward R. Dougherty: Construction of genomic networks using mutual-information clustering and reversible-jump Markov-chain-Monte-Carlo predictor design. Signal Processing 83(4): 745-761 (2003)

Edward R. Dougherty, Ilya Shmulevich: Mappings between probabilistic Boolean networks. Signal Processing 83(4): 799-809 (2003)

Alan C. Green, Stephen Marshall, David Greenhalgh, Edward R. Dougherty: Design of multi-mask aperture filters. Signal Processing 83(9): 1961-1971 (2003)

Ilya Shmulevich, Edward R. Dougherty, Seungchan Kim, Wei Zhang: Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks. Bioinformatics 18(2): 261-274 (2002)

Yidong Chen, Vishnu G. Kamat, Edward R. Dougherty, Michael L. Bittner, Paul S. Meltzer, Jeffrey M. Trent: Ratio statistics of gene expression levels and applications to microarray data analysis. Bioinformatics 18(9): 1207-1215 (2002)

Ilya Shmulevich, Edward R. Dougherty, Wei Zhang: ayesian automatic relevance determination algorithms for classifying gene expression data. Bioinformatics 18(10): 1332-1339 (2002)

Edward R. Dougherty, Junior Barrera, Marcel Brun, Seungchan Kim, Roberto Marcondes Cesar Junior, Yidong Chen, Michael L. Bittner, Jeffrey M. Trent: Inference from Clustering with Application to Gene-Expression Microarrays. Journal of Computational Biology 9(1): 105-126 (2002)

Seungchan Kim, Edward R. Dougherty, Junior Barrera, Yidong Chen, Michael L. Bittner, Jeffrey M. Trent: Strong Feature Sets from Small Samples. Journal of Computational Biology 9(1): 127-146 (2002)

Edward R. Dougherty, Jaakko Astola: Guest Editorial. Journal of Mathematical Imaging and Vision 16(3): 179-180 (2002)

Edward R. Dougherty, Junior Barrera: Pattern Recognition Theory in Nonlinear Signal Processing. Journal of Mathematical Imaging and Vision 16(3): 181-197 (2002)

Roberto Hirata Jr., Marcel Brun, Junior Barrera, Edward R. Dougherty: Multiresolution Design of Aperture Operators. Journal of Mathematical Imaging and Vision 16(3): 199-222 (2002)

Edward R. Dougherty: Granulometric Size Density for Segmented Random-Disk Models. Journal of Mathematical Imaging and Vision 17(3): 271-281 (2002)

Yoganand Balagurunathan, Edward R. Dougherty: Optimal linear granulometric estimation for random sets. Pattern Recognition 35(6): 1315-1325 (2002)

Artyom M. Grigoryan, Galen Hostetter, Olli-P. Kallioniemi, Edward R. Dougherty: Simulation Toolbox for 3D-FISH Spot-Counting Algorithms. Real-Time Imaging 8(3): 203-212 (2002)

Edward R. Dougherty: Editorial. J. Electronic Imaging 10(1): 6 (2001)

Edward R. Dougherty: Optimal Conjunctive Granulometric Bandpass Filters. Journal of Mathematical Imaging and Vision 14(1): 39-51 (2001)

Edward R. Dougherty, Junior Barrera, Gerard Mozelle, Seungchan Kim, Marcel Brun: Multiresolution Analysis for Optimal Binary Filters. Journal of Mathematical Imaging and Vision 14(1): 53-72 (2001)

Sinan Batman, Edward R. Dougherty: Morphological granulometric estimation of random patterns in the context of parameterized random sets. Pattern Recognition 34(6): 1207-1217 (2001)

Nipon Theera-Umpon, Edward R. Dougherty, Paul D. Gader: Non-homothetic granulometric mixing theory with application to blood cell counting. Pattern Recognition 34(12): 2547-2560 (2001)

Krishnamoorthy Sivakumar, Yoganand Balagurunathan, Edward R. Dougherty: Asymptotic joint normality of the granulometric moments. Pattern Recognition Letters 22(14): 1537-1543 (2001)

Edward R. Dougherty, Yidong Chen: Robust optimal granulometric bandpass filters. Signal Processing 81(7): 1357-1372 (2001)

Artyom M. Grigoryan, Edward R. Dougherty: Bayesian robust optimal linear filters. Signal Processing 81(12): 2503-2521 (2001)

Marcel Brun, Roberto Hirata Jr., Junior Barrera, Edward R. Dougherty: Hybrid Human-Machine Non-Linear Filter Design Using Envelopes. SIBGRAPI 2001: 106-111

Vishnu G. Kamat, Edward R. Dougherty, Junior Barrera: Multiresolution Bayesian design of binary filters. J. Electronic Imaging 9(3): 283-295 (2000)

Sinan Batman, Edward R. Dougherty, Francis Sand: Heterogeneous morphological granulometries. Pattern Recognition 33(6): 1047-1057 (2000)

Nina S. T. Hirata, Edward R. Dougherty, Junior Barrera: A switching algorithm for design of optimal increasing binary filters over large windows. Pattern Recognition 33(6): 1059-1081 (2000)

Krishnamoorthy Sivakumar, M. J. Patel, Nasser Kehtarnavaz, Yoganand Balagurunathan, Edward R. Dougherty: A Constant-time Algorithm for Erosions/Dilations with Applications to Morphological Texture Feature Computation. Real-Time Imaging 6(3): 223-239 (2000)

Roberto Hirata Jr., Edward R. Dougherty, Junior Barrera: Aperture filters. Signal Processing 80(4): 697-721 (2000)

Junior Barrera, Edward R. Dougherty, Marcel Brun: Hybrid human-machine binary morphological operator design. An independent constraint approach. Signal Processing 80(8): 1469-1487 (2000)

Edward R. Dougherty, Seungchan Kim, Yidong Chen: Coefficient of determination in nonlinear signal processing. Signal Processing 80(10): 2219-2235 (2000)

Edward R. Dougherty: Random processes for image and signal processing. SPIE / IEEE series on imaging science and engineering, IEEE 1999, isbn 978-0-7803-3495-3, pp. I-XIX, 1-592

Sooncheol Baeg, Sinan Batman, Edward R. Dougherty, Vishnu G. Kamat, Nasser Kehtarnavaz, Seungchan Kim, Anthony T. Popov, Krishnamoorthy Sivakumar, Robert B. Shah: Unsupervised morphological granulometric texture segmentation of digital mammograms. J. Electronic Imaging 8(1): 65-75 (1999)

Octavian V. Sarca, Edward R. Dougherty, Jaakko Astola: Two-stage binary filters. J. Electronic Imaging 8(3): 219-232 (1999)

Yidong Chen, Edward R. Dougherty: Markovian Analysis of Adaptive Reconstructive Multiparameter tau-Openings. Journal of Mathematical Imaging and Vision 10(3): 253-267 (1999)

Artyom M. Grigoryan, Edward R. Dougherty: Design and Analysis of Robust Binary Filters in the Context of a Prior Distribution for the States of Nature. Journal of Mathematical Imaging and Vision 11(3): 239-254 (1999)

John C. Handley, Edward R. Dougherty: Maximum-likelihood estimation and optimal filtering in the nondirectional, one-dimensional binomial germ-grain model. Pattern Recognition 32(9): 1529-1541 (1999)

Francis Sand, Edward R. Dougherty: Robustness of granulometric moments. Pattern Recognition 32(9): 1657-1665 (1999)

John C. Handley, Edward R. Dougherty: Probability distributions for discrete one-dimensional coverage processes. Signal Processing 69(2): 163-168 (1999)

Edward R. Dougherty, Michael L. Bittner, Yidong Chen, Seungchan Kim, Krishnamoorthy Sivakumar, Junior Barrera, Paul S. Meltzer, Jeffrey M. Trent: Nonlinear filters in genomic control. NSIP 1999: 10-14

Edward R. Dougherty: The Granulometric Size Density in Filter Optimization. SIBGRAPI 1999: 257-264

Nina S. T. Hirata, Junior Barrera, Edward R. Dougherty: Design of Statistically Optimal Stack Filters. SIBGRAPI 1999: 265-274

Edward R. Dougherty: Editorial. J. Electronic Imaging 7(1): 5 (1998)

Artyom M. Grigoryan, Edward R. Dougherty: Robustness of optimal binary filters. J. Electronic Imaging 7(1): 117-126 (1998)

Francis Sand, Edward R. Dougherty: Asymptotic granulometric mixing theorem: Morphological estimation of sizing parameters and mixture proportions. Pattern Recognition 31(1): 53-61 (1998)

Octavian V. Sarca, Edward R. Dougherty, Jaakko Astola: Secondarily constrained Boolean filters. Signal Processing 71(3): 247-263 (1998)

Sooncheol Baeg, Anthony T. Popov, Vishnu G. Kamat, Sinan Batman, Krishnamoorthy Sivakumar, Nasser Kehtarnavaz, Edward R. Dougherty, Robert B. Shah: Segmentation of Mammograms into Distinct Morphological Texture Regions. CBMS 1998: 20-25

John C. Handley, Edward R. Dougherty: Maximum-Likelihood Estimation for the Two-Dimensional Discrete Boolean Random Set and Function Models Using Multidimensional Linear Samples. CVGIP: Graphical Model and Image Processing 59(4): 221-231 (1997)

Edward R. Dougherty: Editorial. J. Electronic Imaging 6(1): 4 (1997)

Junior Barrera, Edward R. Dougherty, Nina S. Tomita: Automatic programming of binary morphological machines by design of statistically optimal operators in the context of computational learning theory. J. Electronic Imaging 6(1): 54-67 (1997)

Edward R. Dougherty: Editorial. J. Electronic Imaging 6(2): 152 (1997)

Edward R. Dougherty: Editorial. J. Electronic Imaging 6(3): 268 (1997)

Edward R. Dougherty: Optimal Binary Morphological Bandpass Filters Induced by Granulometric Spectral Representation. Journal of Mathematical Imaging and Vision 7(2): 175-192 (1997)

Robert P. Loce, Edward R. Dougherty, Ronald E. Jodoin, Michael S. Cianciosi: Logically Efficient Spatial Resolution Conversion Using Paired Increasing Operators. Real-Time Imaging 3(1): 7-16 (1997)

Edward R. Dougherty, Clara Cuciurean-Zapan: Optimal reconstructive τ-openings for disjoint and statistically modeled nondisjoint grains. Signal Processing 56(1): 45-58 (1997)

Yidong Chen, Edward R. Dougherty: Optimal and adaptive reconstructive granulometric bandpass filters. Signal Processing 61(1): 65-81 (1997)

Divyendu Sinha, Purnendu Sinha, Edward R. Dougherty, Sinan Batman: Design and analysis of fuzzy morphological algorithms for image processing. IEEE T. Fuzzy Systems 5(4): 570-584 (1997)

Edward R. Dougherty: Editorial. J. Electronic Imaging 5(1): 4-5 (1996)

Edward R. Dougherty, Robert P. Loce: Optimal binary differencing filters: design, logic complexity, precision analysis, and application to digital document processing. J. Electronic Imaging 5(1): 66-86 (1996)

Edward R. Dougherty: Editorial. J. Electronic Imaging 5(2): 116 (1996)

Edward R. Dougherty: Editorial. J. Electronic Imaging 5(3): 248 (1996)

Yidong Chen, Edward R. Dougherty: Adaptive reconstructive tau-openings: convergence and the steady-state distribution. J. Electronic Imaging 5(3): 266-282 (1996)

Edward R. Dougherty: Editorial. J. Electronic Imaging 5(4): 428 (1996)

Edward R. Dougherty: Existence and synthesis of minimal-basis morphological solutions for a restoration-based boundary-value problem. Journal of Mathematical Imaging and Vision 6(4): 315-333 (1996)

Edward R. Dougherty, Yidong Chen, Amir Waks: Bayesian morphological peak estimation and its application to chromosome counting via fluorescence In situ hybridization. Pattern Recognition 29(6): 987-996 (1996)

Edward R. Dougherty: Editorial. J. Electronic Imaging 4(1): 4 (1995)

Edward R. Dougherty: Editorial. J. Electronic Imaging 4(2): 112 (1995)

Edward R. Dougherty: Editorial. J. Electronic Imaging 4(3): 224 (1995)

Edward R. Dougherty: Editorial. J. Electronic Imaging 4(4): 328 (1995)

Edward R. Dougherty, Yingchong Cheng: Morphological pattern-spectrum classification of noisy shapes: Exterior granulometries. Pattern Recognition 28(1): 81-98 (1995)

Edward R. Dougherty, Divyendu Sinha: Computational Gray-scale Mathematical Morphology on Lattices (A Comparator-based Image Algebra) Part 1: Architecture. Real-Time Imaging 1(1): 69-85 (1995)

Edward R. Dougherty, Divyendu Sinha: Computational Gray-scale Mathematical Morphology on Lattices (A Comparator-based Image Algebra) Part II: Image Operators. Real-Time Imaging 1(4): 283-295 (1995)

Divyendu Sinha, Edward R. Dougherty: A general axiomatic theory of intrinsically fuzzy mathematical morphologies. IEEE T. Fuzzy Systems 3(4): 389-403 (1995)

John C. Handley, Edward R. Dougherty: Model-based optimal restoration of fax images in the context of mathematical morphology. J. Electronic Imaging 3(2): 182-189 (1994)

Edward R. Dougherty: Optimal mean-absolute-error filtering of gray-scale signals by the morphological hit-or-miss transform. Journal of Mathematical Imaging and Vision 4(3): 255-271 (1994)

Edward R. Dougherty: Minimal representation of -openings via pattern bases. Pattern Recognition Letters 15(10): 1029-1033 (1994)

Ian R. Joughin, Robert M. Haralick, Edward R. Dougherty: Model-based algorithm for designing suboptimal morphological filters for restoring subtractive-noise-corrupted images. J. Electronic Imaging 2(4): 314-325 (1993)

Bruno Bettoli, Edward R. Dougherty: Linear granulometric moments of noisy binary images. Journal of Mathematical Imaging and Vision 3(3): 299-319 (1993)

Edward R. Dougherty, Robert P. Loce: Robust Morphologically Continuous Fourier Descriptors I: Projection-Generated Descriptors. IJPRAI 6(5): 873-892 (1992)

Edward R. Dougherty, Robert P. Loce: Robust Morphologically Continuous Fourier Descriptors II: Continuity and Occlusion Analysis. IJPRAI 6(5): 893-911 (1992)

Edward R. Dougherty, Jeff B. Pelz, Francis Sand, Arnold Lent: Morphological image segmentation by local granulometric size distributions. J. Electronic Imaging 1(1): 46-60 (1992)

Edward R. Dougherty: Euclidean gray-scale granulometries: Representation and umbra inducement. Journal of Mathematical Imaging and Vision 1(1): 7-21 (1992)

Francis Sand, Edward R. Dougherty: Statistics of the morphological pattern-spectrum moments for a random-grain model. Journal of Mathematical Imaging and Vision 1(2): 121-135 (1992)

Edward R. Dougherty, Robert M. Haralick: Hole-spectrum representation and model-based optimal morphological restoration of binary images degraded by subtractive noise. Journal of Mathematical Imaging and Vision 1(3): 257-278 (1992)

Edward R. Dougherty, Robert M. Haralick: Unification of nonlinear filtering in the context of binary logical calculus, part I: Binary filters. Journal of Mathematical Imaging and Vision 2(2-3): 173-183 (1992)

Edward R. Dougherty: Unification of nonlinear filtering in the context of binary logical calculus, part II: Gray-scale filters. Journal of Mathematical Imaging and Vision 2(2-3): 185-192 (1992)

Edward R. Dougherty, John T. Newell, Jeff B. Pelz: Morphological texture-based maximum-likelihood pixel classification based on local granulometric moments. Pattern Recognition 25(10): 1181-1198 (1992)

Edward R. Dougherty, Charles R. Giardina: Mathematical methods for artificial intelligence and autonomous systems. Prentice Hall 1988, isbn 978-0-13-560921-7, pp. I-XV, 1-446