Sorin Draghici

Adi L. Tarca, Sorin Draghici, Gaurav Bhatti, Roberto Romero: Down-weighting overlapping genes improves gene set analysis. BMC Bioinformatics 13: 136 (2012)

Nadeem Ansari, Riyue Bao, Calin Voichita, Sorin Draghici: Detecting Phenotype-Specific Interactions between Biological Processes from Microarray Data and Annotations. IEEE/ACM Trans. Comput. Biology Bioinform. 9(5): 1399-1409 (2012)

Zeinab Tagliavi, Sorin Draghici: MDAsim: A multiple displacement amplification simulator. BIBM 2012: 1-4

Calin Voichita, Michele Donato, Sorin Draghici: Incorporating Gene Significance in the Impact Analysis of Signaling Pathways. ICMLA (1) 2012: 126-131

Michele Donato, Sorin Draghici, Alin Tomoiaga, Peter Westfall, Zhonghui Xu, Roberto Romero: A method for analysis and correction of cross-talk effects in pathway analysis. IJCNN 2012: 1-7

Luca Beltrame, Enrica Calura, Razvan R. Popovici, Lisa Rizzetto, Damariz Rivero Guedez, Michele Donato, Chiara Romualdi, Sorin Draghici, Duccio Cavalieri: The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways. Bioinformatics 27(15): 2127-2133 (2011)

Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici: Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis. IEEE/ACM Trans. Comput. Biology Bioinform. 7(1): 91-99 (2010)

Michele Donato, Sorin Draghici: Signaling pathways coupling phenomena. IJCNN 2010: 1-6

Sorin Draghici, Taghi M. Khoshgoftaar, Vasile Palade, Witold Pedrycz, M. Arif Wani, Xingquan Zhu (Eds.): The Ninth International Conference on Machine Learning and Applications, ICMLA 2010, Washington, DC, USA, 12-14 December 2010. IEEE Computer Society 2010, isbn 978-0-7695-4300-0

Adi L. Tarca, Sorin Draghici, Purvesh Khatri, Sonia S. Hassan, Pooja Mittal, Jung-sun Kim, Chong Jai Kim, Juan Pedro Kusanovic, Roberto Romero: A novel signaling pathway impact analysis. Bioinformatics 25(1): 75-82 (2009)

Sorin Draghici, Adi L. Tarca, Longfei Yu, Stephen Ethier, Roberto Romero: KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours. Bioinformatics 24(5): 738-740 (2008)

Calin Voichita, Purvesh Khatri, Sorin Draghici: Identifying uncertainty regions in Support Vector Machines using geometric margin and convex hulls. IJCNN 2008: 3319-3324

Purvesh Khatri, Calin Voichita, Khalid Kattan, Nadeem Ansari, Avani Khatri, Constantin Georgescu, Adi L. Tarca, Sorin Draghici: Onto-Tools: new additions and improvements in 2006. Nucleic Acids Research 35(Web-Server-Issue): 206-211 (2007)

Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Draghici: Machine Learning and Its Applications to Biology. PLoS Computational Biology 3(6) (2007)

Purvesh Khatri, Sorin Draghici, Adi L. Tarca, Sonia S. Hassan, Roberto Romero: A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks. CIARP 2007: 32-41

Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici: Semantic Analysis of Genome Annotations using Weighting Schemes. CIBCB 2007: 212-218

Sorin Draghici, Sivakumar Sellamuthu, Purvesh Khatri: Babel's tower revisited: a universal resource for cross-referencing across annotation databases. Bioinformatics 22(23): 2934-2939 (2006)

Purvesh Khatri, Valmik Desai, Adi L. Tarca, Sivakumar Sellamuthu, Derek E. Wildman, Roberto Romero, Sorin Draghici: New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. Nucleic Acids Research 34(Web-Server-Issue): 626-631 (2006)

Purvesh Khatri, Bogdan Done, Archana Rao, Arina Done, Sorin Draghici: A semantic analysis of the annotations of the human genome. Bioinformatics 21(16): 3416-3421 (2005)

Purvesh Khatri, Sorin Draghici: Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics 21(18): 3587-3595 (2005)

Purvesh Khatri, Sivakumar Sellamuthu, Pooja Malhotra, Kashyap Amin, Arina Done, Sorin Draghici: Recent additions and improvements to the Onto-Tools. Nucleic Acids Research 33(Web-Server-Issue): 762-765 (2005)

Otto Muzik, Siamak Pourabdollah, Csaba Juhász, Diane C. Chugani, James Janisse, Sorin Draghici: Application of an objective method for localizing bilateral cortical FDG PET abnormalities to guide the resection of epileptic foci. IEEE Trans. Biomed. Engineering 52(9): 1574-1581 (2005)

Valmik Desai, Purvesh Khatri, Arina Done, Aviva Friedman, Michael A. Tainsky, Sorin Draghici: A Novel Bioinformatics Technique for Predicting Condition-specific Transcription Factor Binding Sites. CIBCB 2005: 202-207

Sorin Draghici, Purvesh Khatri, Yanhong Liu, Kitty J. Chase, Elizabeth A. Bode, David A. Kulesh, Leonard P. Wasieloski, David A. Norwood, Jaques Reifman: Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats. Pacific Symposium on Biocomputing 2005

Bin Yao, Sanjay N. Rakhade, Qunfang Li, Sharlin Ahmed, Raul Krauss, Sorin Draghici, Jeffrey A. Loeb: Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells. BMC Bioinformatics 5: 99 (2004)

Michael Johnson, Farshad Fotouhi, Sorin Draghici, Ming Dong, Duo Xu: Discovering Document Semantics QBYS: A System for Querying the WWW by Semantics. Multimedia Tools Appl. 24(2): 155-188 (2004)

Purvesh Khatri, Pratik Bhavsar, Gagandeep Bawa, Sorin Draghici: Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Research 32(Web-Server-Issue): 449-456 (2004)

Sorin Draghici, R. Brian Potter: Predicting HIV drug resistance with neural networks. Bioinformatics 19(1): 98-107 (2003)

Sorin Draghici, Frank M. Graziano, Samira Y. Kettoola, Ishwar K. Sethi, George Towfic: Mining HIV Dynamics Using Independent Component Analysis. Bioinformatics 19(8): 981-986 (2003)

Sorin Draghici, Olga Kulaeva, Bruce Hoff, Anton Petrov, Soheil Shams, Michael A. Tainsky: Noise Sampling Method: An ANOVA Approach Allowing Robust Selection of Differentially Regulated Genes Measured by DNA Microarrays. Bioinformatics 19(11): 1348-1359 (2003)

Sorin Draghici, Purvesh Khatri, Pratik Bhavsar, Abhik Shah, Stephen A. Krawetz, Michael A. Tainsky: Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Research 31(13): 3775-3781 (2003)

Siamak Pourabdollah, Otto Muzik, Sorin Draghici: A Back Propagation Neural Network for Localizing Abnormal Cortical Regions in FDG PET Images in Epileptic Children. IWANN (2) 2003: 623-630

Sorin Draghici, Korkut Uygun, Xiaoju Wang, Mita Chatterjee, Michael A. Tainsky: Cancer Prediction by Protein Microarray Profiling. Neural Networks and Computational Intelligence 2003: 136-141

David A. Sprecher, Sorin Draghici: Space-filling curves and Kolmogorov superposition-based neural networks. Neural Networks 15(1): 57-67 (2002)

Sorin Draghici: On the capabilities of neural networks using limited precision weights. Neural Networks 15(3): 395-414 (2002)

R. Brian Potter, Sorin Draghici: A SOFM Approach to Predicting HIV Drug Resistance. Pacific Symposium on Biocomputing 2002: 77-87

Sorin Draghici: The constraint based decomposition (CBD) training architecture. Neural Networks 14(4-5): 527-550 (2001)

Sorin Draghici: Neural Networks in Analog Hardware - Design and Implementation Issues. Int. J. Neural Syst. 10(1): 19-42 (2000)

Valeriu Beiu, Sorin Draghici, Thierry de Pauw: A Constructive Approach to Calculating Lower Entropy Bounds. Neural Processing Letters 9(1): 1-12 (1999)

Sorin Draghici: On the Computational Power of Limited Precision Weights Neutral Networks in Classification Problems: How to Calculate the Weight Range so that a Solution Will Exist. IWANN (1) 1999: 401-412

Sorin Draghici: On the Complexity of VLSI-Friendly Neural Networks for Classification Problems. Canadian Conference on AI 1998: 285-297

Sorin Draghici: A Neural Network Based Artificial Vision System for Licence Plate Recognition. Int. J. Neural Syst. 8(1): 113-126 (1997)

Sorin Draghici, Ishwar K. Sethi: On the Possibilities of the Limited Precision Weights Neural Networks in Classification Problems. IWANN 1997: 753-762

Valeriu Beiu, Sorin Draghici, Hanna E. Makaruk: On limited fan-in optimal neural networks. SBRN 1997: 19-30