Robert A. Edwards

Robert Schmieder, Yan Wei Lim, Robert A. Edwards: Identification and removal of ribosomal RNA sequences from metatranscriptomes. Bioinformatics 28(3): 433-435 (2012)

Katelyn McNair, Barbara A. Bailey, Robert A. Edwards: PHACTS, a computational approach to classifying the lifestyle of phages. Bioinformatics 28(5): 614-618 (2012)

Bas E. Dutilh, Robert Schmieder, James Nulton, Ben Felts, Peter Salamon, Robert A. Edwards, John Mokili: Reference-independent comparative metagenomics using cross-assembly: crAss. Bioinformatics 28(24): 3225-3231 (2012)

Robert A. Edwards, Robert Olson, Terry Disz, Gordon D. Pusch, Veronika Vonstein, Rick Stevens, Ross A. Overbeek: Real Time Metagenomics: Using k-mers to annotate metagenomes. Bioinformatics 28(24): 3316-3317 (2012)

Bhakti Dwivedi, Robert Schmieder, Dawn B. Goldsmith, Robert A. Edwards, Mya Breitbart: PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity. BMC Bioinformatics 13: 37 (2012)

Robert Schmieder, Robert A. Edwards: Quality control and preprocessing of metagenomic datasets. Bioinformatics 27(6): 863-864 (2011)

Ramy K. Aziz, Bhakti Dwivedi, Mya Breitbart, Robert A. Edwards: Phage Eco-Locator: a web tool for visualization and analysis of phage genomes in metagenomic data sets. BMC Bioinformatics 12(S-7): A9 (2011)

Terry Disz, Sajia Akhter, Daniel Cuevas, Robert Olson, Ross A. Overbeek, Veronika Vonstein, Rick Stevens, Robert A. Edwards: Accessing the SEED genome databases via Web services API: tools for programmers. BMC Bioinformatics 11: 319 (2010)

Robert Schmieder, Yan Wei Lim, Forest Rohwer, Robert A. Edwards: TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets. BMC Bioinformatics 11: 341 (2010)

Chad Wagner, Anna Salamon, Robert A. Edwards, Forest Rohwer, Peter Salamon: Deviations from Ultrametricity in Phage Protein Distances. Open Syst. Inform. Dynam. 16(1): 75-84 (2009)

Florent E. Angly, Dana Willner, Alejandra Prieto-Davó, Robert A. Edwards, Robert Schmieder, Rebecca Vega-Thurber, Dionysios A. Antonopoulos, Katie Barott, Matthew T. Cottrell, Christelle Desnues, Elizabeth A. Dinsdale, Mike Furlan, Matthew Haynes, Matthew R. Henn, Yongfei Hu, David L. Kirchman, Tracey McDole, John D. McPherson, Folker Meyer, R. Michael Miller, Egbert Mundt, Robert K. Naviaux, Beltran Rodriguez-Mueller, Rick Stevens, Linda Wegley, Lixin Zhang, Baoli Zhu, Forest Rohwer: The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes. PLoS Computational Biology 5(12) (2009)

Folker Meyer, Daniel Paarmann, Mark D'Souza, Robert Olson, Elizabeth M. Glass, Michael Kubal, Tobias Paczian, Alexis A. Rodriguez, Rick Stevens, Andreas Wilke, Jared Wilkening, Robert A. Edwards: The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9 (2008)

Leslie Klis McNeil, Claudia Reich, Ramy K. Aziz, Daniela Bartels, Matthew Cohoon, Terry Disz, Robert A. Edwards, Svetlana Gerdes, Kaitlyn Hwang, Michael Kubal, Gohar Rem Margaryan, Folker Meyer, William Mihalo, Gary J. Olsen, Robert Olson, Andrei Osterman, Daniel Paarmann, Tobias Paczian, Bruce D. Parrello, Gordon D. Pusch, Dmitry A. Rodionov, Xinghua Shi, Olga Vassieva, Veronika Vonstein, Olga Zagnitko, Fangfang Xia, Jenifer Zinner, Ross A. Overbeek, Rick Stevens: The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Research 35(Database-Issue): 347-353 (2007)

Beltran Rodriguez-Brito, Forest Rohwer, Robert A. Edwards: An application of statistics to comparative metagenomics. BMC Bioinformatics 7: 162 (2006)

Lutz Krause, Naryttza N. Diaz, Daniela Bartels, Robert A. Edwards, Alfred Pühler, Forest Rohwer, Folker Meyer, Jens Stoye: Finding novel genes in bacterial communities isolated from the environment. ISMB (Supplement of Bioinformatics) 2006: 281-289