Michael B. Eisen

Oliver Rübel, Sean Ahern, E. Wes Bethel, Mark D. Biggin, Hank Childs, Estelle Cormier-Michel, Angela H. DePace, Michael B. Eisen, Charless C. Fowlkes, Cameron G. R. Geddes, Hans Hagen, Bernd Hamann, Min-Yu Huang, Soile V. E. Keränen, David W. Knowles, Cris L. Luengo Hendriks, Jitendra Malik, Jeremy S. Meredith, Peter Messmer, Prabhat: Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data. Procedia CS 1(1): 1757-1764 (2010)

Oliver Rübel, Gunther H. Weber, Min-Yu Huang, E. Wes Bethel, Mark D. Biggin, Charless C. Fowlkes, Cris L. Luengo Hendriks, Soile V. E. Keränen, Michael B. Eisen, David W. Knowles, Jitendra Malik, Hans Hagen, Bernd Hamann: Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data. IEEE/ACM Trans. Comput. Biology Bioinform. 7(1): 64-79 (2010)

Richard W. Lusk, Michael B. Eisen: Use of an Evolutionary Model to Provide Evidence for a Wide Heterogenity of Required Affinities Between Transcription Factors and Their Binding Sites in Yeast. Pacific Symposium on Biocomputing 2008: 489-500

Oliver Rübel, Gunther H. Weber, Min-Yu Huang, E. Wes Bethel, Soile V. E. Keränen, Charless C. Fowlkes, Cris L. Luengo Hendriks, Angela H. DePace, L. Simirenko, Michael B. Eisen, Mark D. Biggin, Hans Hagen, Jitendra Malik, David W. Knowles, Bernd Hamann: PointCloudXplore 2: Visual Exploration of 3D Gene Expression. Visualization of Large and Unstructured Data Sets 2007: 125-137

Daniel A. Pollard, Alan M. Moses, Venky N. Iyer, Michael B. Eisen: Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments. BMC Bioinformatics 7: 376 (2006)

Julian Mintseris, Michael B. Eisen: Design of a combinatorial DNA microarray for protein-DNA interaction studies. BMC Bioinformatics 7: 429 (2006)

Alan M. Moses, Daniel A. Pollard, David A. Nix, Venky N. Iyer, Xiao-Yong Li, Mark D. Biggin, Michael B. Eisen: Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila. PLoS Computational Biology 2(10) (2006)

Hanchuan Peng, Fuhui Long, Michael B. Eisen, Eugene W. Myers: Clustering gene expression patterns of fly embryos. ISBI 2006: 1144-1147

Oliver Rübel, Gunther H. Weber, Soile V. E. Keränen, Charless C. Fowlkes, Cris L. Luengo Hendriks, L. Simirenko, N. Y. Shah, Michael B. Eisen, Mark D. Biggin, Hans Hagen, Damir Sudar, Jitendra Malik, David W. Knowles, Bernd Hamann: PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates. EuroVis 2006: 203-210

David A. Nix, Michael B. Eisen: GATA: a graphic alignment tool for comparative sequence analysis. BMC Bioinformatics 6: 9 (2005)

Philip E. Bourne, Steven E. Brenner, Michael B. Eisen: PLoS Computational Biology: A New Community Journal. PLoS Computational Biology 1(1) (2005)

Daniel A. Pollard, Casey M. Bergman, Jens Stoye, Susan E. Celniker, Michael B. Eisen: Benchmarking tools for the alignment of functional noncoding DNA. BMC Bioinformatics 5: 6 (2004)

Daniel A. Pollard, Casey M. Bergman, Jens Stoye, Susan E. Celniker, Michael B. Eisen: Correction: Benchmarking tools for the alignment of functional noncodingDNA. BMC Bioinformatics 5: 73 (2004)

Alan M. Moses, Derek Y. Chiang, Michael B. Eisen: Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures. Pacific Symposium on Biocomputing 2004: 324-335

Derek Y. Chiang, Alan M. Moses, Manolis Kamvysselis, Eric S. Lander, Michael B. Eisen: Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts. RECOMB 2003: 84-93

Sündüz Keles, Mark J. van der Laan, Michael B. Eisen: Identification of regulatory elements using a feature selection method. Bioinformatics 18(9): 1167-1175 (2002)

Gavin Sherlock, Tina Hernandez-Boussard, Andrew Kasarskis, Gail Binkley, John C. Matese, Selina S. Dwight, Miroslava Kaloper, Shuai Weng, Heng Jin, Catherine A. Ball, Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein, J. Michael Cherry: The Stanford Microarray Database. Nucleic Acids Research 29(1): 152-155 (2001)

Derek Y. Chiang, Patrick O. Brown, Michael B. Eisen: Visualizing associations between genome sequences and gene expression data using genome-mean expression profiles. ISMB (Supplement of Bioinformatics) 2001: 49-55