Nadia El-Mabrouk

Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk: Ancestral Genome Organization: An Alignment Approach. Journal of Computational Biology 20(4): 280-295 (2013)

Billel Benzaid, Riccardo Dondi, Nadia El-Mabrouk: Duplication-Loss Genome Alignment: Complexity and Algorithm. LATA 2013: 116-127

Krister M. Swenson, Andrea Doroftei, Nadia El-Mabrouk: Gene tree correction for reconciliation and species tree inference. Algorithms for Molecular Biology 7: 31 (2012)

Krister M. Swenson, Nadia El-Mabrouk: Gene trees and species trees: irreconcilable differences. BMC Bioinformatics 13(S-19): S15 (2012)

Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk: A flexible ancestral genome reconstruction method based on gapped adjacencies. BMC Bioinformatics 13(S-19): S4 (2012)

Riccardo Dondi, Nadia El-Mabrouk: Minimum Leaf Removal for Reconciliation: Complexity and Algorithms. CPM 2012: 399-412

Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk: Evolution of Genome Organization by Duplication and Loss: An Alignment Approach. RECOMB 2012: 94-112

Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk: An Optimal Reconciliation Algorithm for Gene Trees with Polytomies. WABI 2012: 106-122

Riccardo Dondi, Nadia El-Mabrouk: On the Complexity of Minimum Labeling Alignment of Two Genomes. CoRR abs/1206.1877 (2012)

Olivier Tremblay Savard, Denis Bertrand, Nadia El-Mabrouk: Evolution of orthologous tandemly arrayed gene clusters. BMC Bioinformatics 12(S-9): S2 (2011)

Olivier Tremblay Savard, Yves Gagnon, Denis Bertrand, Nadia El-Mabrouk: Genome Halving and Double Distance with Losses. Journal of Computational Biology 18(9): 1185-1199 (2011)

Andrea Doroftei, Nadia El-Mabrouk: Removing Noise from Gene Trees. WABI 2011: 76-91

Yves Gagnon, Olivier Tremblay Savard, Denis Bertrand, Nadia El-Mabrouk: Advances on Genome Duplication Distances. RECOMB-CG 2010: 25-38

Denis Bertrand, Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk: Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss. WABI 2010: 78-89

Denis Bertrand, Mathieu Blanchette, Nadia El-Mabrouk: Genetic Map Refinement Using a Comparative Genomic Approach. Journal of Computational Biology 16(10): 1475-1486 (2009)

Cedric Chauve, Nadia El-Mabrouk: New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees. RECOMB 2009: 46-58

Cedric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk: Gene Family Evolution by Duplication, Speciation, and Loss. Journal of Computational Biology 15(8): 1043-1062 (2008)

Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk: Inferring Ancestral Gene Orders for a Family of Tandemly Arrayed Genes. Journal of Computational Biology 15(8): 1063-1077 (2008)

Denis Bertrand, Mathieu Blanchette, Nadia El-Mabrouk: A Phylogenetic Approach to Genetic Map Refinement. RECOMB-CG 2008: 198-210

Guillaume Blin, Eric Blais, Danny Hermelin, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk: Gene Maps Linearization Using Genomic Rearrangement Distances. Journal of Computational Biology 14(4): 394-407 (2007)

Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, Olivier Gascuel: Duplication and Inversion History of a Tandemly Repeated Genes Family. Journal of Computational Biology 14(4): 462-478 (2007)

Jean-Eudes Duchesne, Mathieu Giraud, Nadia El-Mabrouk: Seed-Based Exclusion Method for Non-coding RNA Gene Search. COCOON 2007: 27-39

Cedric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk: Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract). RECOMB-CG 2007: 45-57

Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk: Evolution of Tandemly Arrayed Genes in Multiple Species. RECOMB-CG 2007: 96-109

Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk: Inferring Gene Orders from Gene Maps Using the Breakpoint Distance. Comparative Genomics 2006: 99-112

Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, Olivier Gascuel: Evolution of Tandemly Repeated Sequences Through Duplication and Inversion. Comparative Genomics 2006: 129-140

Guillaume Bourque, Nadia El-Mabrouk (Eds.): Comparative Genomics, RECOMB 2006 International Workshop, RCG 2006, Montreal, Canada, September 24-26, 2006, Proceedings. Lecture Notes in Computer Science 4205, Springer 2006, isbn 3-540-44529-3

Nadia El-Mabrouk, Mathieu Raffinot, Jean-Eudes Duchesne, Mathieu Lajoie, Nicolas Luc: Approximate Matching of Structured Motifs in Dna Sequences. J. Bioinformatics and Computational Biology 3(2): 317-342 (2005)

Mathieu Lajoie, Nadia El-Mabrouk: Recovering haplotype structure through recombination and gene conversion. ECCB/JBI 2005: 179

Guillaume Bourque, Yasmine Yacef, Nadia El-Mabrouk: Maximizing Synteny Blocks to Identify Ancestral Homologs. Comparative Genomics 2005: 21-34

Nadia El-Mabrouk, Damian Labuda: Haplotypes histories as pathways of recombinations. Bioinformatics 20(12): 1836-1841 (2004)

Nadia El-Mabrouk: Deriving Haplotypes through Recombination and Gene Conversion Pathways. J. Bioinformatics and Computational Biology 2(2): 241-256 (2004)

David Sankoff, Jean-François Lefebvre, Elisabeth R. M. Tillier, Adrian Maler, Nadia El-Mabrouk: The Distribution of Inversion Lengths in Bacteria. Comparative Genomics 2004: 97-108

Nadia El-Mabrouk, David Sankoff: The Reconstruction of Doubled Genomes. SIAM J. Comput. 32(3): 754-792 (2003)

Jean-François Lefebvre, Nadia El-Mabrouk, Elisabeth R. M. Tillier, David Sankoff: Detection and validation of single gene inversions. ISMB (Supplement of Bioinformatics) 2003: 190-196

Nadia El-Mabrouk: Reconstructing an ancestral genome using minimum segments duplications and reversals. J. Comput. Syst. Sci. 65(3): 442-464 (2002)

Nadia El-Mabrouk, Mathieu Raffinot: Approximate matching of secondary structures. RECOMB 2002: 156-164

Yasmine Ajana, Jean-François Lefebvre, Elisabeth R. M. Tillier, Nadia El-Mabrouk: Exploring the Set of All Minimal Sequences of Reversals - An Application to Test the Replication-Directed Reversal Hypothesis. WABI 2002: 300-315

Nadia El-Mabrouk: Genome Rearrangement by Reversals and Insertions/Deletions of Contiguous Segments. CPM 2000: 222-234

Nadia El-Mabrouk, David Sankoff: Hybridization and Genome Rearrangement. CPM 1999: 78-87

Nadia El-Mabrouk, David Bryant, David Sankoff: Reconstructing the pre-doubling genome. RECOMB 1999: 154-163

Nadia El-Mabrouk, Joseph H. Nadeau, David Sankoff: Genome Halving. CPM 1998: 235-250

Nadia El-Mabrouk, Maxime Crochemore: Boyer-Moore Strategy to Efficient Approximate String Matching. CPM 1996: 24-38