Mark H. Ellisman

David N. Orloff, Janet H. Iwasa, Maryann E. Martone, Mark H. Ellisman, Caroline M. Kane: The cell: an image library-CCDB: a curated repository of microscopy data. Nucleic Acids Research 41(Database-Issue): 1241-1250 (2013)

Elizabeth Jurrus, Shigeki Watanabe, Richard J. Giuly, António R. C. Paiva, Mark H. Ellisman, Erik M. Jorgensen, Tolga Tasdizen: Semi-Automated Neuron Boundary Detection and Nonbranching Process Segmentation in Electron Microscopy Images. Neuroinformatics 11(1): 5-29 (2013)

Richard J. Giuly, Maryann E. Martone, Mark H. Ellisman: Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets. BMC Bioinformatics 13: 29 (2012)

Vadim Astakhov, Anita Bandrowski, Amarnath Gupta, A. W. Kulungowski, Jeffrey S. Grethe, James Bouwer, T. Molin, V. Rowley, S. Penticoff, Masako Terada, W. Wong, Hiroyuki Hakozaki, O. Kwon, Maryann E. Martone, Mark H. Ellisman: Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics. Procedia CS 9: 1595-1603 (2012)

Ting Liu, Elizabeth Jurrus, Mojtaba Seyedhosseini, Mark H. Ellisman, Tolga Tasdizen: Watershed merge tree classification for electron microscopy image segmentation. ICPR 2012: 133-137

Albert F. Lawrence, Seastien Phan, Mark H. Ellisman: Electron Tomography and Multiscale Biology. TAMC 2012: 109-130

Shulei Sun, Jing Chen, Weizhong Li, Ilkay Altintas, Abel W. Lin, Steven Peltier, Karen Stocks, Eric E. Allen, Mark H. Ellisman, Jeffrey S. Grethe, John C. Wooley: Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucleic Acids Research 39(Database-Issue): 546-551 (2011)

Abel W. Lin, Ilkay Altintas, Chris Churas, Madhusudan Gujral, Jeffrey S. Grethe, Mark H. Ellisman: Case Study on the Use of REST Architectural Principles for Scientific Analysis: CAMERA - Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis. REST: From Research to Practice 2011: 319-338

Chris Mungall, David Anderson, Anita Bandrowski, Brian A. Canada, Andrew Chatr-aryamontri, Keith C. Cheng, P. Michael Conn, Kara Dolinski, Mark H. Ellisman, Janan T. Eppig, Jeffrey S. Grethe, Joseph Kemnitz, Shawn Iadonato, Stephen D. Larson, Charles Magness, Maryann E. Martone, Mike Tyers, Carlo Torniai, Olga G. Troyanskaya, Judith Turner, Monte Westerfield, Melissa Haendel: An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases. ICBO 2011

Mojtaba Seyedhosseini, Ritwik Kumar, Elizabeth Jurrus, Rick Giuly, Mark H. Ellisman, Hanspeter Pfister, Tolga Tasdizen: Detection of Neuron Membranes in Electron Microscopy Images Using Multi-scale Context and Radon-Like Features. MICCAI (1) 2011: 670-677

Ilkay Altintas, Abel W. Lin, Jing Chen, Chris Churas, Madhusudan Gujral, Shulei Sun, Weizhong Li, Ramil Manansala, Mayya Sedova, Jeffrey S. Grethe, Mark H. Ellisman: CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows. SERVICES 2010: 352-359

Yolanda Gil, Ewa Deelman, Mark H. Ellisman, Thomas Fahringer, Geoffrey Fox, Dennis Gannon, Carole A. Goble, Miron Livny, Luc Moreau, Jim Myers: Examining the Challenges of Scientific Workflows. IEEE Computer 40(12): 24-32 (2007)

Rajvikram Singh, Nicholas Schwarz, Nut Taesombut, David Lee, Byungil Jeong, Luc Renambot, Abel W. Lin, Ruth West, Hiromu Otsuka, Sei Naito, Steven Peltier, Maryann E. Martone, Kazunori Nozaki, Jason Leigh, Mark H. Ellisman: Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end OptIPuter. Future Generation Comp. Syst. 22(8): 1032-1039 (2006)

Diana L. Price, Sunny K. Chow, Natalie A. B. MacLean, Hiroyuki Hakozaki, Steven Peltier, Maryann E. Martone, Mark H. Ellisman: High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders. Neuroinformatics 4(1): 65-80 (2006)

Vadim Astakhov, Amarnath Gupta, Jeffrey S. Grethe, Edward Ross, David Little, Aylin Yilmaz, Xufei Qian, Simone Santini, Maryann E. Martone, Mark H. Ellisman: Semantically Based Data Integration Environment for Biomedical Research. CBMS 2006: 171-176

Ron Kikinis, Tina Kapur, Martha Elizabeth Shenton, Jeffrey S. Grethe, Mark H. Ellisman: "Big Science" and Schizophrenia. ISBI 2006: 804-805

Gina E. Sosinsky, Thomas J. Deerinck, Rocco Greco, Casey H. Buitenhuys, Thomas M. Bartol, Mark H. Ellisman: Development of a model for microphysiological simulations - Small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography. Neuroinformatics 3(2): 133-162 (2005)

Abel W. Lin, Lu Dai, Khim Ung, Steven Peltier, Mark H. Ellisman: The Telescience Project: Application to Middleware Interaction Components. CBMS 2005: 543-548

Toyokazu Akiyama, Kazunori Nozaki, Seiichi Kato, Shinji Shimojo, Steven Peltier, Abel W. Lin, Tomas E. Molina, George Yang, David Lee, Mark H. Ellisman, Kiyokazu Yoshida, Hirotaro Mori: Scientific grid activities in Cybermedia Center, Osaka University. CCGRID 2005: 463-470

Abel W. Lin, Lu Dai, Khim Ung, Jeff Mock, Steven Peltier, Mark H. Ellisman: The Telescience Tools: Version 2.0. e-Science 2005: 56-63

Tomas E. Molina, George Yang, Abel W. Lin, Steven Peltier, Mark H. Ellisman: A Generalized Service-Oriented Architecture for Remote Control of Scientific Imaging Instruments. e-Science 2005: 550-556

Mark H. Ellisman, Michael Brady, David Hart, Fang-Pang Lin, Matthias S. Müller, Larry Smarr: The emerging role of biogrids. Commun. ACM 47(11): 52-57 (2004)

Henri Casanova, Francine Berman, Thomas M. Bartol, Erhan Gokcay, Terrence J. Sejnowski, Adam Birnbaum, Jack Dongarra, Michelle Miller, Mark H. Ellisman, Marcio Faerman, Graziano Obertelli, Richard Wolski, Stuart M. Pomerantz, Joel R. Stiles: The Virtual Instrument: Support for Grid-Enabled Mcell Simulations. IJHPCA 18(1): 3-17 (2004)

Harvey Newman, Mark H. Ellisman, John A. Orcutt: Data-intensive e-science frontier research. Commun. ACM 46(11): 68-77 (2003)

Erik Viirre, Mark H. Ellisman: Vertigo in Virtual Reality with Haptics: Case Report. Cyberpsy., Behavior, and Soc. Networking 6(4): 429-431 (2003)

David Lee, Abel W. Lin, Thomas Hutton, Toyokazu Akiyama, Shinji Shimojo, Fang-Pang Lin, Steven Peltier, Mark H. Ellisman: Global Telescience featuring IPv6 at iGrid2002. Future Generation Comp. Syst. 19(6): 1031-1039 (2003)

Steven Peltier, Abel W. Lin, David Lee, Stephen Mock, Stephan Lamont, Tomas E. Molina, Mona Wong, Lu Dai, Maryann E. Martone, Mark H. Ellisman: The Telescience Portal for advanced tomography applications. J. Parallel Distrib. Comput. 63(5): 539-550 (2003)

Maryann E. Martone, Shenglan Zhang, Amarnath Gupta, Xufei Qian, Haiyun He, Diana L. Price, Mona Wong, Simone Santini, Mark H. Ellisman: The cell-centered database - A database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics 1(4): 379-395 (2003)

Joel R. Stiles, W. C. Ford, J. M. Pattillo, Thomas E. Deerinck, Mark H. Ellisman, Thomas M. Bartol, Terrence J. Sejnowski: Spatially Realistic Computational Physiology: Past, Present and Future. PARCO 2003: 685-694

José-Jesús Fernández, Albert F. Lawrence, Javier Roca Piera, Inmaculada García, Mark H. Ellisman, José María Carazo: High Performance Computing in Electron Microscope Tomography of Complex Biological Structures. VECPAR 2002: 166-180

Shava Smallen, Walfredo Cirne, Jaime Frey, Francine Berman, Richard Wolski, Mei-Hui Su, Carl Kesselman, Stephen J. Young, Mark H. Ellisman: Combining Workstations and Supercomputers to Support Grid Applications: The Parallel Tomography Experience. Heterogeneous Computing Workshop 2000: 241-252

Reagan Moore, Thomas A. Prince, Mark H. Ellisman: Data-Intensive Computing and Digital Libraries. Commun. ACM 41(11): 56-62 (1998)

Philip J. Mercurio, T. Todd Elvins, Stephen J. Young, Philip S. Cohen, Kevin R. Fall, Mark H. Ellisman: The Distributed Laboratory - An Interactive Visualization Environment for Electron Microscopy and 3D Imaging. Commun. ACM 35(6): 54-63 (1992)