Andrew Emili

Clement Chung, Andrew Emili, Brendan J. Frey: Non-parametric Bayesian approach to post-translational modification refinement of predictions from tandem mass spectrometry. Bioinformatics 29(7): 821-829 (2013)

Clement Chung, Jian Liu, Andrew Emili, Brendan J. Frey: Computational refinement of post-translational modifications predicted from tandem mass spectrometry. Bioinformatics 27(6): 797-806 (2011)

Andrei L. Turinsky, Brian Turner, Rosanne C. Borja, James A. Gleeson, Michael Heath, Shuye Pu, Thomas Switzer, Dong Dong, Yunchen Gong, Tuan On, Xuejian Xiong, Andrew Emili, Jack Greenblatt, John Parkinson, Zhaolei Zhang, Shoshana J. Wodak: DAnCER: Disease-Annotated Chromatin Epigenetics Resource. Nucleic Acids Research 39(Database-Issue): 889-894 (2011)

Pingzhao Hu, Hui Jiang, Andrew Emili: Predicting protein functions by relaxation labelling protein interaction network. BMC Bioinformatics 11(S-1): 64 (2010)

Chong Su, José M. Peregrin-Alvarez, Gareth Butland, Sadhna Phanse, Vincent Fong, Andrew Emili, John Parkinson: Bacteriome.org - an integrated protein interaction database for E. coli. Nucleic Acids Research 36(Database-Issue): 632-636 (2008)

Delbert Dueck, Brendan J. Frey, Nebojsa Jojic, Vladimir Jojic, Guri Giaever, Andrew Emili, Gabe Musso, Robert Hegele: Constructing Treatment Portfolios Using Affinity Propagation. RECOMB 2008: 360-371

Jennifer Listgarten, Radford M. Neal, Sam T. Roweis, Peter Wong, Andrew Emili: Difference detection in LC-MS data for protein biomarker discovery. Bioinformatics 23(2): 198-204 (2007)

Anitha Kannan, Andrew Emili, Brendan J. Frey: A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements. RECOMB 2007: 325-338

Sylvain Pitre, Frank K. H. A. Dehne, Albert Chan, James Cheetham, Alex Duong, Andrew Emili, Marinella Gebbia, Jack Greenblatt, Matthew Jessulat, Nevan J. Krogan, Xuemei Luo, Ashkan Golshani: PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs. BMC Bioinformatics 7: 365 (2006)

Peyman Najmabadi, Andrew A. Goldenberg, Andrew Emili: A scalable robotic-based laboratory automation system for medium-sized biotechnology laboratories. CASE 2005: 166-171

Jennifer Listgarten, Radford M. Neal, Sam T. Roweis, Andrew Emili: Multiple Alignment of Continuous Time Series. NIPS 2004